Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13705 and ABID97_RS13710 are separated by 84 nucleotides ABID97_RS13710 and ABID97_RS13715 are separated by 32 nucleotides ABID97_RS13715 and ABID97_RS13720 overlap by 20 nucleotides
ABID97_RS13705: ABID97_RS13705 - hypothetical protein, at 2,851,900 to 2,853,510
_RS13705
ABID97_RS13710: ABID97_RS13710 - pyocin activator PrtN family protein, at 2,853,595 to 2,853,870
_RS13710
ABID97_RS13715: ABID97_RS13715 - DNA cytosine methyltransferase, at 2,853,903 to 2,854,661
_RS13715
ABID97_RS13720: ABID97_RS13720 - hypothetical protein, at 2,854,642 to 2,855,397
_RS13720
Position (kb)
2853
2854 Strain fitness (log2 ratio)
-1
0
1 at 2852.628 kb on + strand, within ABID97_RS13705 at 2852.628 kb on + strand, within ABID97_RS13705 at 2852.629 kb on - strand, within ABID97_RS13705 at 2852.714 kb on - strand, within ABID97_RS13705 at 2853.060 kb on + strand, within ABID97_RS13705 at 2853.231 kb on + strand, within ABID97_RS13705 at 2853.557 kb on + strand at 2853.662 kb on + strand, within ABID97_RS13710 at 2853.662 kb on + strand, within ABID97_RS13710 at 2853.860 kb on - strand at 2854.135 kb on + strand, within ABID97_RS13715 at 2854.136 kb on - strand, within ABID97_RS13715 at 2854.136 kb on - strand, within ABID97_RS13715 at 2854.136 kb on - strand, within ABID97_RS13715 at 2854.219 kb on - strand, within ABID97_RS13715 at 2854.363 kb on - strand, within ABID97_RS13715 at 2854.363 kb on - strand, within ABID97_RS13715 at 2854.482 kb on + strand, within ABID97_RS13715 at 2854.483 kb on - strand, within ABID97_RS13715 at 2854.552 kb on + strand, within ABID97_RS13715
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 2,852,628 + ABID97_RS13705 0.45 +1.6 2,852,628 + ABID97_RS13705 0.45 -0.6 2,852,629 - ABID97_RS13705 0.45 -0.0 2,852,714 - ABID97_RS13705 0.51 -0.9 2,853,060 + ABID97_RS13705 0.72 +1.0 2,853,231 + ABID97_RS13705 0.83 +0.6 2,853,557 + +1.0 2,853,662 + ABID97_RS13710 0.24 -1.2 2,853,662 + ABID97_RS13710 0.24 -0.5 2,853,860 - -1.5 2,854,135 + ABID97_RS13715 0.31 +1.3 2,854,136 - ABID97_RS13715 0.31 -0.8 2,854,136 - ABID97_RS13715 0.31 -0.0 2,854,136 - ABID97_RS13715 0.31 -1.0 2,854,219 - ABID97_RS13715 0.42 -0.8 2,854,363 - ABID97_RS13715 0.61 +0.1 2,854,363 - ABID97_RS13715 0.61 +0.2 2,854,482 + ABID97_RS13715 0.76 -0.0 2,854,483 - ABID97_RS13715 0.76 -0.4 2,854,552 + ABID97_RS13715 0.86 -1.5
Or see this region's nucleotide sequence