Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13710

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13705 and ABID97_RS13710 are separated by 84 nucleotidesABID97_RS13710 and ABID97_RS13715 are separated by 32 nucleotidesABID97_RS13715 and ABID97_RS13720 overlap by 20 nucleotides ABID97_RS13705: ABID97_RS13705 - hypothetical protein, at 2,851,900 to 2,853,510 _RS13705 ABID97_RS13710: ABID97_RS13710 - pyocin activator PrtN family protein, at 2,853,595 to 2,853,870 _RS13710 ABID97_RS13715: ABID97_RS13715 - DNA cytosine methyltransferase, at 2,853,903 to 2,854,661 _RS13715 ABID97_RS13720: ABID97_RS13720 - hypothetical protein, at 2,854,642 to 2,855,397 _RS13720 Position (kb) 2853 2854Strain fitness (log2 ratio) -1 0 1at 2852.628 kb on + strand, within ABID97_RS13705at 2852.628 kb on + strand, within ABID97_RS13705at 2852.629 kb on - strand, within ABID97_RS13705at 2852.714 kb on - strand, within ABID97_RS13705at 2853.060 kb on + strand, within ABID97_RS13705at 2853.231 kb on + strand, within ABID97_RS13705at 2853.557 kb on + strandat 2853.662 kb on + strand, within ABID97_RS13710at 2853.662 kb on + strand, within ABID97_RS13710at 2853.860 kb on - strandat 2854.135 kb on + strand, within ABID97_RS13715at 2854.136 kb on - strand, within ABID97_RS13715at 2854.136 kb on - strand, within ABID97_RS13715at 2854.136 kb on - strand, within ABID97_RS13715at 2854.219 kb on - strand, within ABID97_RS13715at 2854.363 kb on - strand, within ABID97_RS13715at 2854.363 kb on - strand, within ABID97_RS13715at 2854.482 kb on + strand, within ABID97_RS13715at 2854.483 kb on - strand, within ABID97_RS13715at 2854.552 kb on + strand, within ABID97_RS13715

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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2,852,628 + ABID97_RS13705 0.45 +1.6
2,852,628 + ABID97_RS13705 0.45 -0.6
2,852,629 - ABID97_RS13705 0.45 -0.0
2,852,714 - ABID97_RS13705 0.51 -0.9
2,853,060 + ABID97_RS13705 0.72 +1.0
2,853,231 + ABID97_RS13705 0.83 +0.6
2,853,557 + +1.0
2,853,662 + ABID97_RS13710 0.24 -1.2
2,853,662 + ABID97_RS13710 0.24 -0.5
2,853,860 - -1.5
2,854,135 + ABID97_RS13715 0.31 +1.3
2,854,136 - ABID97_RS13715 0.31 -0.8
2,854,136 - ABID97_RS13715 0.31 -0.0
2,854,136 - ABID97_RS13715 0.31 -1.0
2,854,219 - ABID97_RS13715 0.42 -0.8
2,854,363 - ABID97_RS13715 0.61 +0.1
2,854,363 - ABID97_RS13715 0.61 +0.2
2,854,482 + ABID97_RS13715 0.76 -0.0
2,854,483 - ABID97_RS13715 0.76 -0.4
2,854,552 + ABID97_RS13715 0.86 -1.5

Or see this region's nucleotide sequence