Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13435

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13430 and ABID97_RS13435 are separated by 229 nucleotidesABID97_RS13435 and ABID97_RS13440 are separated by 7 nucleotides ABID97_RS13430: ABID97_RS13430 - 3-keto-5-aminohexanoate cleavage protein, at 2,796,229 to 2,797,113 _RS13430 ABID97_RS13435: ABID97_RS13435 - fumarylacetoacetate hydrolase family protein, at 2,797,343 to 2,798,341 _RS13435 ABID97_RS13440: ABID97_RS13440 - fumarylacetoacetate hydrolase family protein, at 2,798,349 to 2,799,359 _RS13440 Position (kb) 2797 2798 2799Strain fitness (log2 ratio) -1 0 1at 2796.914 kb on + strand, within ABID97_RS13430at 2796.915 kb on - strand, within ABID97_RS13430at 2797.115 kb on + strandat 2797.115 kb on + strandat 2797.116 kb on - strandat 2797.140 kb on + strandat 2797.140 kb on + strandat 2798.135 kb on + strand, within ABID97_RS13435at 2798.136 kb on - strand, within ABID97_RS13435at 2798.989 kb on - strand, within ABID97_RS13440at 2799.180 kb on + strand, within ABID97_RS13440at 2799.256 kb on - strand, within ABID97_RS13440

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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2,796,914 + ABID97_RS13430 0.77 -0.3
2,796,915 - ABID97_RS13430 0.78 -1.2
2,797,115 + +0.4
2,797,115 + -0.1
2,797,116 - -0.4
2,797,140 + +0.3
2,797,140 + -1.2
2,798,135 + ABID97_RS13435 0.79 -1.4
2,798,136 - ABID97_RS13435 0.79 +0.6
2,798,989 - ABID97_RS13440 0.63 +0.3
2,799,180 + ABID97_RS13440 0.82 -0.2
2,799,256 - ABID97_RS13440 0.90 -0.2

Or see this region's nucleotide sequence