Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12070

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12065 and ABID97_RS12070 are separated by 186 nucleotidesABID97_RS12070 and ABID97_RS12075 are separated by 34 nucleotides ABID97_RS12065: ABID97_RS12065 - exodeoxyribonuclease III, at 2,492,286 to 2,493,065 _RS12065 ABID97_RS12070: ABID97_RS12070 - EAL domain-containing protein, at 2,493,252 to 2,493,938 _RS12070 ABID97_RS12075: ABID97_RS12075 - ATPase, T2SS/T4P/T4SS family, at 2,493,973 to 2,495,862 _RS12075 Position (kb) 2493 2494Strain fitness (log2 ratio) -1 0 1at 2492.559 kb on + strand, within ABID97_RS12065at 2492.601 kb on + strand, within ABID97_RS12065at 2492.601 kb on + strand, within ABID97_RS12065at 2492.643 kb on + strand, within ABID97_RS12065at 2492.714 kb on - strand, within ABID97_RS12065at 2492.757 kb on + strand, within ABID97_RS12065at 2492.757 kb on + strand, within ABID97_RS12065at 2492.757 kb on + strand, within ABID97_RS12065at 2492.757 kb on + strand, within ABID97_RS12065at 2492.758 kb on - strand, within ABID97_RS12065at 2492.758 kb on - strand, within ABID97_RS12065at 2492.758 kb on - strand, within ABID97_RS12065at 2492.758 kb on - strand, within ABID97_RS12065at 2492.880 kb on + strand, within ABID97_RS12065at 2492.880 kb on + strand, within ABID97_RS12065at 2492.880 kb on + strand, within ABID97_RS12065at 2492.880 kb on + strand, within ABID97_RS12065at 2492.880 kb on + strand, within ABID97_RS12065at 2492.880 kb on + strand, within ABID97_RS12065at 2492.881 kb on - strand, within ABID97_RS12065at 2492.881 kb on - strand, within ABID97_RS12065at 2492.881 kb on - strand, within ABID97_RS12065at 2492.881 kb on - strand, within ABID97_RS12065at 2492.886 kb on + strand, within ABID97_RS12065at 2492.887 kb on - strand, within ABID97_RS12065at 2492.887 kb on - strand, within ABID97_RS12065at 2492.887 kb on - strand, within ABID97_RS12065at 2492.896 kb on - strand, within ABID97_RS12065at 2493.064 kb on - strandat 2493.069 kb on + strandat 2493.096 kb on + strandat 2493.161 kb on + strandat 2493.161 kb on + strandat 2493.198 kb on - strandat 2493.612 kb on + strand, within ABID97_RS12070at 2493.661 kb on - strand, within ABID97_RS12070at 2493.879 kb on + strandat 2493.879 kb on + strandat 2494.238 kb on + strand, within ABID97_RS12075at 2494.314 kb on - strand, within ABID97_RS12075at 2494.314 kb on - strand, within ABID97_RS12075

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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2,492,559 + ABID97_RS12065 0.35 -0.5
2,492,601 + ABID97_RS12065 0.40 +0.0
2,492,601 + ABID97_RS12065 0.40 -0.4
2,492,643 + ABID97_RS12065 0.46 +0.0
2,492,714 - ABID97_RS12065 0.55 +0.2
2,492,757 + ABID97_RS12065 0.60 -0.4
2,492,757 + ABID97_RS12065 0.60 +0.3
2,492,757 + ABID97_RS12065 0.60 -0.7
2,492,757 + ABID97_RS12065 0.60 +0.2
2,492,758 - ABID97_RS12065 0.61 -0.4
2,492,758 - ABID97_RS12065 0.61 -1.0
2,492,758 - ABID97_RS12065 0.61 -0.6
2,492,758 - ABID97_RS12065 0.61 +1.6
2,492,880 + ABID97_RS12065 0.76 +1.1
2,492,880 + ABID97_RS12065 0.76 +0.4
2,492,880 + ABID97_RS12065 0.76 +1.0
2,492,880 + ABID97_RS12065 0.76 -0.2
2,492,880 + ABID97_RS12065 0.76 -0.1
2,492,880 + ABID97_RS12065 0.76 -0.6
2,492,881 - ABID97_RS12065 0.76 +0.7
2,492,881 - ABID97_RS12065 0.76 -0.1
2,492,881 - ABID97_RS12065 0.76 +0.8
2,492,881 - ABID97_RS12065 0.76 +0.2
2,492,886 + ABID97_RS12065 0.77 -0.1
2,492,887 - ABID97_RS12065 0.77 -0.6
2,492,887 - ABID97_RS12065 0.77 +0.8
2,492,887 - ABID97_RS12065 0.77 -0.6
2,492,896 - ABID97_RS12065 0.78 +0.4
2,493,064 - -0.2
2,493,069 + +0.3
2,493,096 + +0.3
2,493,161 + -0.5
2,493,161 + +0.3
2,493,198 - +0.9
2,493,612 + ABID97_RS12070 0.52 -0.8
2,493,661 - ABID97_RS12070 0.60 -0.7
2,493,879 + -0.3
2,493,879 + -0.3
2,494,238 + ABID97_RS12075 0.14 +0.0
2,494,314 - ABID97_RS12075 0.18 +0.3
2,494,314 - ABID97_RS12075 0.18 -0.0

Or see this region's nucleotide sequence