Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12065 and ABID97_RS12070 are separated by 186 nucleotides ABID97_RS12070 and ABID97_RS12075 are separated by 34 nucleotides
ABID97_RS12065: ABID97_RS12065 - exodeoxyribonuclease III, at 2,492,286 to 2,493,065
_RS12065
ABID97_RS12070: ABID97_RS12070 - EAL domain-containing protein, at 2,493,252 to 2,493,938
_RS12070
ABID97_RS12075: ABID97_RS12075 - ATPase, T2SS/T4P/T4SS family, at 2,493,973 to 2,495,862
_RS12075
Position (kb)
2493
2494 Strain fitness (log2 ratio)
-1
0
1 at 2492.559 kb on + strand, within ABID97_RS12065 at 2492.601 kb on + strand, within ABID97_RS12065 at 2492.601 kb on + strand, within ABID97_RS12065 at 2492.643 kb on + strand, within ABID97_RS12065 at 2492.714 kb on - strand, within ABID97_RS12065 at 2492.757 kb on + strand, within ABID97_RS12065 at 2492.757 kb on + strand, within ABID97_RS12065 at 2492.757 kb on + strand, within ABID97_RS12065 at 2492.757 kb on + strand, within ABID97_RS12065 at 2492.758 kb on - strand, within ABID97_RS12065 at 2492.758 kb on - strand, within ABID97_RS12065 at 2492.758 kb on - strand, within ABID97_RS12065 at 2492.758 kb on - strand, within ABID97_RS12065 at 2492.880 kb on + strand, within ABID97_RS12065 at 2492.880 kb on + strand, within ABID97_RS12065 at 2492.880 kb on + strand, within ABID97_RS12065 at 2492.880 kb on + strand, within ABID97_RS12065 at 2492.880 kb on + strand, within ABID97_RS12065 at 2492.880 kb on + strand, within ABID97_RS12065 at 2492.881 kb on - strand, within ABID97_RS12065 at 2492.881 kb on - strand, within ABID97_RS12065 at 2492.881 kb on - strand, within ABID97_RS12065 at 2492.881 kb on - strand, within ABID97_RS12065 at 2492.886 kb on + strand, within ABID97_RS12065 at 2492.887 kb on - strand, within ABID97_RS12065 at 2492.887 kb on - strand, within ABID97_RS12065 at 2492.887 kb on - strand, within ABID97_RS12065 at 2492.896 kb on - strand, within ABID97_RS12065 at 2493.064 kb on - strand at 2493.069 kb on + strand at 2493.096 kb on + strand at 2493.161 kb on + strand at 2493.161 kb on + strand at 2493.198 kb on - strand at 2493.612 kb on + strand, within ABID97_RS12070 at 2493.661 kb on - strand, within ABID97_RS12070 at 2493.879 kb on + strand at 2493.879 kb on + strand at 2494.238 kb on + strand, within ABID97_RS12075 at 2494.314 kb on - strand, within ABID97_RS12075 at 2494.314 kb on - strand, within ABID97_RS12075
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 2,492,559 + ABID97_RS12065 0.35 -0.5 2,492,601 + ABID97_RS12065 0.40 +0.0 2,492,601 + ABID97_RS12065 0.40 -0.4 2,492,643 + ABID97_RS12065 0.46 +0.0 2,492,714 - ABID97_RS12065 0.55 +0.2 2,492,757 + ABID97_RS12065 0.60 -0.4 2,492,757 + ABID97_RS12065 0.60 +0.3 2,492,757 + ABID97_RS12065 0.60 -0.7 2,492,757 + ABID97_RS12065 0.60 +0.2 2,492,758 - ABID97_RS12065 0.61 -0.4 2,492,758 - ABID97_RS12065 0.61 -1.0 2,492,758 - ABID97_RS12065 0.61 -0.6 2,492,758 - ABID97_RS12065 0.61 +1.6 2,492,880 + ABID97_RS12065 0.76 +1.1 2,492,880 + ABID97_RS12065 0.76 +0.4 2,492,880 + ABID97_RS12065 0.76 +1.0 2,492,880 + ABID97_RS12065 0.76 -0.2 2,492,880 + ABID97_RS12065 0.76 -0.1 2,492,880 + ABID97_RS12065 0.76 -0.6 2,492,881 - ABID97_RS12065 0.76 +0.7 2,492,881 - ABID97_RS12065 0.76 -0.1 2,492,881 - ABID97_RS12065 0.76 +0.8 2,492,881 - ABID97_RS12065 0.76 +0.2 2,492,886 + ABID97_RS12065 0.77 -0.1 2,492,887 - ABID97_RS12065 0.77 -0.6 2,492,887 - ABID97_RS12065 0.77 +0.8 2,492,887 - ABID97_RS12065 0.77 -0.6 2,492,896 - ABID97_RS12065 0.78 +0.4 2,493,064 - -0.2 2,493,069 + +0.3 2,493,096 + +0.3 2,493,161 + -0.5 2,493,161 + +0.3 2,493,198 - +0.9 2,493,612 + ABID97_RS12070 0.52 -0.8 2,493,661 - ABID97_RS12070 0.60 -0.7 2,493,879 + -0.3 2,493,879 + -0.3 2,494,238 + ABID97_RS12075 0.14 +0.0 2,494,314 - ABID97_RS12075 0.18 +0.3 2,494,314 - ABID97_RS12075 0.18 -0.0
Or see this region's nucleotide sequence