Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11875 and ABID97_RS11880 overlap by 4 nucleotides ABID97_RS11880 and ABID97_RS11885 are separated by 2 nucleotides ABID97_RS11885 and ABID97_RS11890 overlap by 4 nucleotides
ABID97_RS11875: ABID97_RS11875 - NAD-dependent epimerase/dehydratase family protein, at 2,452,692 to 2,453,810
_RS11875
ABID97_RS11880: ABID97_RS11880 - NAD-dependent epimerase/dehydratase family protein, at 2,453,807 to 2,454,937
_RS11880
ABID97_RS11885: ABID97_RS11885 - zinc-binding dehydrogenase, at 2,454,940 to 2,455,893
_RS11885
ABID97_RS11890: ABID97_RS11890 - Gfo/Idh/MocA family oxidoreductase, at 2,455,890 to 2,456,954
_RS11890
Position (kb)
2453
2454
2455 Strain fitness (log2 ratio)
-1
0
1 at 2452.923 kb on + strand, within ABID97_RS11875 at 2452.978 kb on - strand, within ABID97_RS11875 at 2453.292 kb on + strand, within ABID97_RS11875 at 2453.638 kb on + strand, within ABID97_RS11875 at 2453.639 kb on - strand, within ABID97_RS11875 at 2453.807 kb on - strand at 2454.242 kb on + strand, within ABID97_RS11880 at 2454.401 kb on + strand, within ABID97_RS11880 at 2455.201 kb on + strand, within ABID97_RS11885 at 2455.639 kb on + strand, within ABID97_RS11885 at 2455.732 kb on + strand, within ABID97_RS11885 at 2455.733 kb on - strand, within ABID97_RS11885 at 2455.733 kb on - strand, within ABID97_RS11885
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 2,452,923 + ABID97_RS11875 0.21 +0.5 2,452,978 - ABID97_RS11875 0.26 +0.3 2,453,292 + ABID97_RS11875 0.54 -0.0 2,453,638 + ABID97_RS11875 0.85 +0.6 2,453,639 - ABID97_RS11875 0.85 +0.1 2,453,807 - -0.9 2,454,242 + ABID97_RS11880 0.38 -0.8 2,454,401 + ABID97_RS11880 0.53 -1.0 2,455,201 + ABID97_RS11885 0.27 +0.0 2,455,639 + ABID97_RS11885 0.73 +0.2 2,455,732 + ABID97_RS11885 0.83 +0.6 2,455,733 - ABID97_RS11885 0.83 -0.2 2,455,733 - ABID97_RS11885 0.83 -0.3
Or see this region's nucleotide sequence