Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11880

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11875 and ABID97_RS11880 overlap by 4 nucleotidesABID97_RS11880 and ABID97_RS11885 are separated by 2 nucleotidesABID97_RS11885 and ABID97_RS11890 overlap by 4 nucleotides ABID97_RS11875: ABID97_RS11875 - NAD-dependent epimerase/dehydratase family protein, at 2,452,692 to 2,453,810 _RS11875 ABID97_RS11880: ABID97_RS11880 - NAD-dependent epimerase/dehydratase family protein, at 2,453,807 to 2,454,937 _RS11880 ABID97_RS11885: ABID97_RS11885 - zinc-binding dehydrogenase, at 2,454,940 to 2,455,893 _RS11885 ABID97_RS11890: ABID97_RS11890 - Gfo/Idh/MocA family oxidoreductase, at 2,455,890 to 2,456,954 _RS11890 Position (kb) 2453 2454 2455Strain fitness (log2 ratio) -1 0 1at 2452.923 kb on + strand, within ABID97_RS11875at 2452.978 kb on - strand, within ABID97_RS11875at 2453.292 kb on + strand, within ABID97_RS11875at 2453.638 kb on + strand, within ABID97_RS11875at 2453.639 kb on - strand, within ABID97_RS11875at 2453.807 kb on - strandat 2454.242 kb on + strand, within ABID97_RS11880at 2454.401 kb on + strand, within ABID97_RS11880at 2455.201 kb on + strand, within ABID97_RS11885at 2455.639 kb on + strand, within ABID97_RS11885at 2455.732 kb on + strand, within ABID97_RS11885at 2455.733 kb on - strand, within ABID97_RS11885at 2455.733 kb on - strand, within ABID97_RS11885

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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2,452,923 + ABID97_RS11875 0.21 +0.5
2,452,978 - ABID97_RS11875 0.26 +0.3
2,453,292 + ABID97_RS11875 0.54 -0.0
2,453,638 + ABID97_RS11875 0.85 +0.6
2,453,639 - ABID97_RS11875 0.85 +0.1
2,453,807 - -0.9
2,454,242 + ABID97_RS11880 0.38 -0.8
2,454,401 + ABID97_RS11880 0.53 -1.0
2,455,201 + ABID97_RS11885 0.27 +0.0
2,455,639 + ABID97_RS11885 0.73 +0.2
2,455,732 + ABID97_RS11885 0.83 +0.6
2,455,733 - ABID97_RS11885 0.83 -0.2
2,455,733 - ABID97_RS11885 0.83 -0.3

Or see this region's nucleotide sequence