Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09635

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09630 and ABID97_RS09635 are separated by 86 nucleotidesABID97_RS09635 and ABID97_RS09640 overlap by 4 nucleotides ABID97_RS09630: ABID97_RS09630 - hypothetical protein, at 2,016,109 to 2,017,041 _RS09630 ABID97_RS09635: ABID97_RS09635 - DEAD/DEAH box helicase family protein, at 2,017,128 to 2,018,585 _RS09635 ABID97_RS09640: ABID97_RS09640 - toprim domain-containing protein, at 2,018,582 to 2,019,472 _RS09640 Position (kb) 2017 2018 2019Strain fitness (log2 ratio) -3 -2 -1 0 1at 2016.259 kb on + strand, within ABID97_RS09630at 2016.260 kb on - strand, within ABID97_RS09630at 2016.459 kb on - strand, within ABID97_RS09630at 2016.929 kb on - strand, within ABID97_RS09630at 2017.186 kb on - strandat 2017.948 kb on + strand, within ABID97_RS09635at 2017.948 kb on + strand, within ABID97_RS09635at 2017.949 kb on - strand, within ABID97_RS09635at 2018.581 kb on + strandat 2018.702 kb on + strand, within ABID97_RS09640at 2018.733 kb on - strand, within ABID97_RS09640at 2018.765 kb on + strand, within ABID97_RS09640at 2018.922 kb on - strand, within ABID97_RS09640at 2018.922 kb on - strand, within ABID97_RS09640at 2019.092 kb on + strand, within ABID97_RS09640at 2019.093 kb on - strand, within ABID97_RS09640at 2019.167 kb on + strand, within ABID97_RS09640at 2019.290 kb on + strand, within ABID97_RS09640at 2019.514 kb on - strandat 2019.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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2,016,259 + ABID97_RS09630 0.16 +0.4
2,016,260 - ABID97_RS09630 0.16 +1.1
2,016,459 - ABID97_RS09630 0.38 -1.0
2,016,929 - ABID97_RS09630 0.88 -1.0
2,017,186 - -0.7
2,017,948 + ABID97_RS09635 0.56 -1.8
2,017,948 + ABID97_RS09635 0.56 +0.2
2,017,949 - ABID97_RS09635 0.56 -2.8
2,018,581 + -1.0
2,018,702 + ABID97_RS09640 0.13 +0.4
2,018,733 - ABID97_RS09640 0.17 -0.2
2,018,765 + ABID97_RS09640 0.21 -0.3
2,018,922 - ABID97_RS09640 0.38 -0.2
2,018,922 - ABID97_RS09640 0.38 +0.7
2,019,092 + ABID97_RS09640 0.57 -0.3
2,019,093 - ABID97_RS09640 0.57 +1.3
2,019,167 + ABID97_RS09640 0.66 -0.5
2,019,290 + ABID97_RS09640 0.79 -0.7
2,019,514 - -0.2
2,019,514 - -0.4

Or see this region's nucleotide sequence