Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09630 and ABID97_RS09635 are separated by 86 nucleotides ABID97_RS09635 and ABID97_RS09640 overlap by 4 nucleotides
ABID97_RS09630: ABID97_RS09630 - hypothetical protein, at 2,016,109 to 2,017,041
_RS09630
ABID97_RS09635: ABID97_RS09635 - DEAD/DEAH box helicase family protein, at 2,017,128 to 2,018,585
_RS09635
ABID97_RS09640: ABID97_RS09640 - toprim domain-containing protein, at 2,018,582 to 2,019,472
_RS09640
Position (kb)
2017
2018
2019 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2016.259 kb on + strand, within ABID97_RS09630 at 2016.260 kb on - strand, within ABID97_RS09630 at 2016.459 kb on - strand, within ABID97_RS09630 at 2016.929 kb on - strand, within ABID97_RS09630 at 2017.186 kb on - strand at 2017.948 kb on + strand, within ABID97_RS09635 at 2017.948 kb on + strand, within ABID97_RS09635 at 2017.949 kb on - strand, within ABID97_RS09635 at 2018.581 kb on + strand at 2018.702 kb on + strand, within ABID97_RS09640 at 2018.733 kb on - strand, within ABID97_RS09640 at 2018.765 kb on + strand, within ABID97_RS09640 at 2018.922 kb on - strand, within ABID97_RS09640 at 2018.922 kb on - strand, within ABID97_RS09640 at 2019.092 kb on + strand, within ABID97_RS09640 at 2019.093 kb on - strand, within ABID97_RS09640 at 2019.167 kb on + strand, within ABID97_RS09640 at 2019.290 kb on + strand, within ABID97_RS09640 at 2019.514 kb on - strand at 2019.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 2,016,259 + ABID97_RS09630 0.16 +0.4 2,016,260 - ABID97_RS09630 0.16 +1.1 2,016,459 - ABID97_RS09630 0.38 -1.0 2,016,929 - ABID97_RS09630 0.88 -1.0 2,017,186 - -0.7 2,017,948 + ABID97_RS09635 0.56 -1.8 2,017,948 + ABID97_RS09635 0.56 +0.2 2,017,949 - ABID97_RS09635 0.56 -2.8 2,018,581 + -1.0 2,018,702 + ABID97_RS09640 0.13 +0.4 2,018,733 - ABID97_RS09640 0.17 -0.2 2,018,765 + ABID97_RS09640 0.21 -0.3 2,018,922 - ABID97_RS09640 0.38 -0.2 2,018,922 - ABID97_RS09640 0.38 +0.7 2,019,092 + ABID97_RS09640 0.57 -0.3 2,019,093 - ABID97_RS09640 0.57 +1.3 2,019,167 + ABID97_RS09640 0.66 -0.5 2,019,290 + ABID97_RS09640 0.79 -0.7 2,019,514 - -0.2 2,019,514 - -0.4
Or see this region's nucleotide sequence