Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08755

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08745 and ABID97_RS08750 are separated by 104 nucleotidesABID97_RS08750 and ABID97_RS08755 are separated by 133 nucleotidesABID97_RS08755 and ABID97_RS08760 are separated by 144 nucleotidesABID97_RS08760 and ABID97_RS08765 are separated by 47 nucleotides ABID97_RS08745: ABID97_RS08745 - ribosome maturation factor RimM, at 1,832,128 to 1,832,682 _RS08745 ABID97_RS08750: ABID97_RS08750 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 1,832,787 to 1,833,533 _RS08750 ABID97_RS08755: ABID97_RS08755 - 50S ribosomal protein L19, at 1,833,667 to 1,834,041 _RS08755 ABID97_RS08760: ABID97_RS08760 - CoA pyrophosphatase, at 1,834,186 to 1,834,905 _RS08760 ABID97_RS08765: ABID97_RS08765 - CobD/CbiB family protein, at 1,834,953 to 1,835,954 _RS08765 Position (kb) 1833 1834 1835Strain fitness (log2 ratio) -1 0 1at 1832.677 kb on + strandat 1833.964 kb on + strand, within ABID97_RS08755at 1833.964 kb on + strand, within ABID97_RS08755at 1833.964 kb on + strand, within ABID97_RS08755at 1833.964 kb on + strand, within ABID97_RS08755at 1833.967 kb on + strand, within ABID97_RS08755at 1833.968 kb on - strand, within ABID97_RS08755at 1834.039 kb on + strandat 1834.039 kb on + strandat 1834.039 kb on + strandat 1834.039 kb on + strandat 1834.134 kb on + strandat 1834.134 kb on + strandat 1834.134 kb on + strandat 1834.135 kb on - strandat 1834.135 kb on - strandat 1834.135 kb on - strandat 1834.135 kb on - strandat 1834.141 kb on + strandat 1834.141 kb on + strandat 1834.141 kb on + strandat 1834.142 kb on - strandat 1834.597 kb on + strand, within ABID97_RS08760at 1834.597 kb on + strand, within ABID97_RS08760at 1834.597 kb on + strand, within ABID97_RS08760at 1834.598 kb on - strand, within ABID97_RS08760at 1834.627 kb on + strand, within ABID97_RS08760at 1834.627 kb on + strand, within ABID97_RS08760at 1834.628 kb on - strand, within ABID97_RS08760at 1834.705 kb on + strand, within ABID97_RS08760at 1834.706 kb on - strand, within ABID97_RS08760at 1834.941 kb on + strandat 1835.024 kb on - strandat 1835.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,832,677 + -0.5
1,833,964 + ABID97_RS08755 0.79 -1.1
1,833,964 + ABID97_RS08755 0.79 -1.1
1,833,964 + ABID97_RS08755 0.79 +0.2
1,833,964 + ABID97_RS08755 0.79 +1.5
1,833,967 + ABID97_RS08755 0.80 -0.5
1,833,968 - ABID97_RS08755 0.80 +0.2
1,834,039 + -0.4
1,834,039 + -0.5
1,834,039 + +0.4
1,834,039 + -0.0
1,834,134 + -0.1
1,834,134 + -0.5
1,834,134 + -0.5
1,834,135 - +0.7
1,834,135 - -1.7
1,834,135 - -1.0
1,834,135 - -0.9
1,834,141 + -0.3
1,834,141 + -1.4
1,834,141 + -1.0
1,834,142 - -0.4
1,834,597 + ABID97_RS08760 0.57 -0.1
1,834,597 + ABID97_RS08760 0.57 +0.4
1,834,597 + ABID97_RS08760 0.57 +0.0
1,834,598 - ABID97_RS08760 0.57 +0.3
1,834,627 + ABID97_RS08760 0.61 -0.0
1,834,627 + ABID97_RS08760 0.61 -0.2
1,834,628 - ABID97_RS08760 0.61 -0.8
1,834,705 + ABID97_RS08760 0.72 -0.1
1,834,706 - ABID97_RS08760 0.72 -0.2
1,834,941 + +1.7
1,835,024 - -0.1
1,835,025 + -1.1

Or see this region's nucleotide sequence