Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08685

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08675 and ABID97_RS08680 are separated by 15 nucleotidesABID97_RS08680 and ABID97_RS08685 overlap by 34 nucleotidesABID97_RS08685 and ABID97_RS08690 overlap by 4 nucleotidesABID97_RS08690 and ABID97_RS08695 are separated by 108 nucleotides ABID97_RS08675: ABID97_RS08675 - RNA polymerase sigma factor, at 1,820,034 to 1,821,332 _RS08675 ABID97_RS08680: ABID97_RS08680 - helix-turn-helix domain-containing protein, at 1,821,348 to 1,822,346 _RS08680 ABID97_RS08685: ABID97_RS08685 - DJ-1/PfpI family protein, at 1,822,313 to 1,822,939 _RS08685 ABID97_RS08690: ABID97_RS08690 - isochorismatase family protein, at 1,822,936 to 1,823,520 _RS08690 ABID97_RS08695: ABID97_RS08695 - permease, at 1,823,629 to 1,824,693 _RS08695 Position (kb) 1822 1823Strain fitness (log2 ratio) -1 0 1 2 3at 1821.520 kb on + strand, within ABID97_RS08680at 1821.521 kb on - strand, within ABID97_RS08680at 1821.836 kb on - strand, within ABID97_RS08680at 1822.315 kb on - strandat 1822.315 kb on - strandat 1822.315 kb on - strandat 1822.410 kb on + strand, within ABID97_RS08685at 1822.410 kb on + strand, within ABID97_RS08685at 1822.411 kb on - strand, within ABID97_RS08685at 1822.411 kb on - strand, within ABID97_RS08685at 1823.114 kb on + strand, within ABID97_RS08690at 1823.114 kb on + strand, within ABID97_RS08690at 1823.115 kb on - strand, within ABID97_RS08690at 1823.115 kb on - strand, within ABID97_RS08690at 1823.115 kb on - strand, within ABID97_RS08690at 1823.465 kb on + strandat 1823.465 kb on + strandat 1823.541 kb on + strandat 1823.795 kb on + strand, within ABID97_RS08695at 1823.796 kb on - strand, within ABID97_RS08695

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,821,520 + ABID97_RS08680 0.17 -0.1
1,821,521 - ABID97_RS08680 0.17 -0.3
1,821,836 - ABID97_RS08680 0.49 -0.8
1,822,315 - +0.7
1,822,315 - -0.2
1,822,315 - +0.6
1,822,410 + ABID97_RS08685 0.15 -1.3
1,822,410 + ABID97_RS08685 0.15 -0.8
1,822,411 - ABID97_RS08685 0.16 -0.8
1,822,411 - ABID97_RS08685 0.16 -0.1
1,823,114 + ABID97_RS08690 0.30 +0.1
1,823,114 + ABID97_RS08690 0.30 -0.8
1,823,115 - ABID97_RS08690 0.31 +0.0
1,823,115 - ABID97_RS08690 0.31 +3.3
1,823,115 - ABID97_RS08690 0.31 +0.0
1,823,465 + +0.1
1,823,465 + -0.3
1,823,541 + -0.8
1,823,795 + ABID97_RS08695 0.16 +0.2
1,823,796 - ABID97_RS08695 0.16 -0.2

Or see this region's nucleotide sequence