Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08660 and ABID97_RS08665 are separated by 129 nucleotides ABID97_RS08665 and ABID97_RS08670 are separated by 26 nucleotides ABID97_RS08670 and ABID97_RS08675 are separated by 3 nucleotides
ABID97_RS08660: ABID97_RS08660 - VOC family protein, at 1,818,598 to 1,819,026
_RS08660
ABID97_RS08665: ABID97_RS08665 - YciI family protein, at 1,819,156 to 1,819,584
_RS08665
ABID97_RS08670: ABID97_RS08670 - YciI family protein, at 1,819,611 to 1,820,030
_RS08670
ABID97_RS08675: ABID97_RS08675 - RNA polymerase sigma factor, at 1,820,034 to 1,821,332
_RS08675
Position (kb) 1819
1820
1821 Strain fitness (log2 ratio) -1
0
1 at 1818.764 kb on - strand, within ABID97_RS08660 at 1818.809 kb on - strand, within ABID97_RS08660 at 1818.908 kb on - strand, within ABID97_RS08660 at 1818.908 kb on - strand, within ABID97_RS08660 at 1819.015 kb on + strand at 1819.645 kb on - strand at 1819.707 kb on + strand, within ABID97_RS08670 at 1820.649 kb on + strand, within ABID97_RS08675 at 1820.649 kb on + strand, within ABID97_RS08675 at 1820.649 kb on + strand, within ABID97_RS08675 at 1820.649 kb on + strand, within ABID97_RS08675 at 1820.650 kb on - strand, within ABID97_RS08675 at 1820.650 kb on - strand, within ABID97_RS08675 at 1820.671 kb on - strand, within ABID97_RS08675 at 1820.671 kb on - strand, within ABID97_RS08675 at 1820.953 kb on - strand, within ABID97_RS08675 at 1820.953 kb on - strand, within ABID97_RS08675
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 1,818,764 - ABID97_RS08660 0.39 -0.8 1,818,809 - ABID97_RS08660 0.49 -0.3 1,818,908 - ABID97_RS08660 0.72 +0.4 1,818,908 - ABID97_RS08660 0.72 -0.1 1,819,015 + -0.2 1,819,645 - +0.1 1,819,707 + ABID97_RS08670 0.23 -0.8 1,820,649 + ABID97_RS08675 0.47 -0.4 1,820,649 + ABID97_RS08675 0.47 +0.3 1,820,649 + ABID97_RS08675 0.47 -0.1 1,820,649 + ABID97_RS08675 0.47 +0.2 1,820,650 - ABID97_RS08675 0.47 -0.4 1,820,650 - ABID97_RS08675 0.47 -0.6 1,820,671 - ABID97_RS08675 0.49 -0.0 1,820,671 - ABID97_RS08675 0.49 +0.0 1,820,953 - ABID97_RS08675 0.71 -1.7 1,820,953 - ABID97_RS08675 0.71 -0.6
Or see this region's nucleotide sequence