Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08530

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08525 and ABID97_RS08530 are separated by 33 nucleotidesABID97_RS08530 and ABID97_RS08535 are separated by 77 nucleotides ABID97_RS08525: ABID97_RS08525 - aldolase/citrate lyase family protein, at 1,789,503 to 1,790,501 _RS08525 ABID97_RS08530: ABID97_RS08530 - hypothetical protein, at 1,790,535 to 1,791,086 _RS08530 ABID97_RS08535: ABID97_RS08535 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 1,791,164 to 1,793,752 _RS08535 Position (kb) 1790 1791 1792Strain fitness (log2 ratio) -2 -1 0 1 2at 1789.582 kb on - strandat 1790.148 kb on + strand, within ABID97_RS08525at 1790.149 kb on - strand, within ABID97_RS08525at 1790.241 kb on + strand, within ABID97_RS08525at 1790.327 kb on + strand, within ABID97_RS08525at 1790.339 kb on + strand, within ABID97_RS08525at 1790.340 kb on - strand, within ABID97_RS08525at 1790.340 kb on - strand, within ABID97_RS08525at 1790.859 kb on + strand, within ABID97_RS08530at 1790.860 kb on - strand, within ABID97_RS08530at 1790.860 kb on - strand, within ABID97_RS08530at 1790.860 kb on - strand, within ABID97_RS08530at 1791.085 kb on - strandat 1791.085 kb on - strandat 1791.085 kb on - strandat 1792.010 kb on + strand, within ABID97_RS08535

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,789,582 - +0.1
1,790,148 + ABID97_RS08525 0.65 -0.0
1,790,149 - ABID97_RS08525 0.65 +0.6
1,790,241 + ABID97_RS08525 0.74 +0.4
1,790,327 + ABID97_RS08525 0.82 -0.4
1,790,339 + ABID97_RS08525 0.84 +0.8
1,790,340 - ABID97_RS08525 0.84 -0.8
1,790,340 - ABID97_RS08525 0.84 -0.1
1,790,859 + ABID97_RS08530 0.59 -2.1
1,790,860 - ABID97_RS08530 0.59 +1.3
1,790,860 - ABID97_RS08530 0.59 -1.5
1,790,860 - ABID97_RS08530 0.59 -1.1
1,791,085 - -1.7
1,791,085 - +1.0
1,791,085 - -0.2
1,792,010 + ABID97_RS08535 0.33 +1.8

Or see this region's nucleotide sequence