Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05610

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05600 and ABID97_RS05605 are separated by 5 nucleotidesABID97_RS05605 and ABID97_RS05610 are separated by 4 nucleotidesABID97_RS05610 and ABID97_RS05615 are separated by 22 nucleotidesABID97_RS05615 and ABID97_RS05620 are separated by 15 nucleotides ABID97_RS05600: ABID97_RS05600 - PhzF family phenazine biosynthesis protein, at 1,177,698 to 1,178,624 _RS05600 ABID97_RS05605: ABID97_RS05605 - glutathione S-transferase, at 1,178,630 to 1,179,271 _RS05605 ABID97_RS05610: ABID97_RS05610 - LysE family translocator, at 1,179,276 to 1,179,947 _RS05610 ABID97_RS05615: ABID97_RS05615 - DJ-1/PfpI family protein, at 1,179,970 to 1,180,596 _RS05615 ABID97_RS05620: ABID97_RS05620 - PLP-dependent aminotransferase family protein, at 1,180,612 to 1,181,814 _RS05620 Position (kb) 1179 1180Strain fitness (log2 ratio) -1 0 1at 1178.576 kb on - strandat 1178.689 kb on - strandat 1178.725 kb on - strand, within ABID97_RS05605at 1178.808 kb on + strand, within ABID97_RS05605at 1178.808 kb on + strand, within ABID97_RS05605at 1178.808 kb on + strand, within ABID97_RS05605at 1178.808 kb on + strand, within ABID97_RS05605at 1178.808 kb on + strand, within ABID97_RS05605at 1178.809 kb on - strand, within ABID97_RS05605at 1178.809 kb on - strand, within ABID97_RS05605at 1178.809 kb on - strand, within ABID97_RS05605at 1178.809 kb on - strand, within ABID97_RS05605at 1179.046 kb on - strand, within ABID97_RS05605at 1179.700 kb on + strand, within ABID97_RS05610at 1179.701 kb on - strand, within ABID97_RS05610at 1180.004 kb on + strandat 1180.037 kb on + strand, within ABID97_RS05615at 1180.037 kb on + strand, within ABID97_RS05615at 1180.067 kb on + strand, within ABID97_RS05615at 1180.067 kb on + strand, within ABID97_RS05615at 1180.067 kb on + strand, within ABID97_RS05615at 1180.067 kb on + strand, within ABID97_RS05615at 1180.068 kb on - strand, within ABID97_RS05615at 1180.068 kb on - strand, within ABID97_RS05615at 1180.068 kb on - strand, within ABID97_RS05615at 1180.068 kb on - strand, within ABID97_RS05615at 1180.131 kb on - strand, within ABID97_RS05615at 1180.163 kb on - strand, within ABID97_RS05615at 1180.163 kb on - strand, within ABID97_RS05615

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,178,576 - -0.2
1,178,689 - -0.1
1,178,725 - ABID97_RS05605 0.15 -0.0
1,178,808 + ABID97_RS05605 0.28 -0.0
1,178,808 + ABID97_RS05605 0.28 +0.1
1,178,808 + ABID97_RS05605 0.28 -0.3
1,178,808 + ABID97_RS05605 0.28 -1.0
1,178,808 + ABID97_RS05605 0.28 +0.3
1,178,809 - ABID97_RS05605 0.28 +0.7
1,178,809 - ABID97_RS05605 0.28 -0.2
1,178,809 - ABID97_RS05605 0.28 -0.1
1,178,809 - ABID97_RS05605 0.28 +0.2
1,179,046 - ABID97_RS05605 0.65 -0.1
1,179,700 + ABID97_RS05610 0.63 -1.0
1,179,701 - ABID97_RS05610 0.63 -0.7
1,180,004 + +0.2
1,180,037 + ABID97_RS05615 0.11 -0.2
1,180,037 + ABID97_RS05615 0.11 -0.2
1,180,067 + ABID97_RS05615 0.15 -0.1
1,180,067 + ABID97_RS05615 0.15 -0.1
1,180,067 + ABID97_RS05615 0.15 +0.1
1,180,067 + ABID97_RS05615 0.15 +0.3
1,180,068 - ABID97_RS05615 0.16 +0.6
1,180,068 - ABID97_RS05615 0.16 -0.8
1,180,068 - ABID97_RS05615 0.16 -1.2
1,180,068 - ABID97_RS05615 0.16 +1.0
1,180,131 - ABID97_RS05615 0.26 +0.8
1,180,163 - ABID97_RS05615 0.31 -0.7
1,180,163 - ABID97_RS05615 0.31 +0.4

Or see this region's nucleotide sequence