Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05110

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05100 and ABID97_RS05105 are separated by 10 nucleotidesABID97_RS05105 and ABID97_RS05110 are separated by 29 nucleotidesABID97_RS05110 and ABID97_RS05115 are separated by 37 nucleotidesABID97_RS05115 and ABID97_RS05120 are separated by 41 nucleotides ABID97_RS05100: ABID97_RS05100 - type VI secretion system tip protein TssI/VgrG, at 1,076,881 to 1,079,283 _RS05100 ABID97_RS05105: ABID97_RS05105 - DUF6484 domain-containing protein, at 1,079,294 to 1,079,764 _RS05105 ABID97_RS05110: ABID97_RS05110 - DUF4150 domain-containing protein, at 1,079,794 to 1,080,555 _RS05110 ABID97_RS05115: ABID97_RS05115 - hypothetical protein, at 1,080,593 to 1,081,072 _RS05115 ABID97_RS05120: ABID97_RS05120 - hypothetical protein, at 1,081,114 to 1,081,608 _RS05120 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -1 0 1at 1079.921 kb on - strand, within ABID97_RS05110at 1080.581 kb on + strandat 1080.623 kb on + strandat 1080.623 kb on + strandat 1081.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,079,921 - ABID97_RS05110 0.17 -1.0
1,080,581 + +0.8
1,080,623 + -0.5
1,080,623 + -0.5
1,081,127 - -0.3

Or see this region's nucleotide sequence