Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04025 and ABID97_RS04030 are separated by 12 nucleotides ABID97_RS04030 and ABID97_RS04035 overlap by 4 nucleotides
ABID97_RS04025: ABID97_RS04025 - ABC transporter substrate-binding protein, at 825,767 to 826,840
_RS04025
ABID97_RS04030: ABID97_RS04030 - FAD-binding oxidoreductase, at 826,853 to 827,983
_RS04030
ABID97_RS04035: ABID97_RS04035 - NAD(P)/FAD-dependent oxidoreductase, at 827,980 to 829,398
_RS04035
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 826.072 kb on - strand, within ABID97_RS04025 at 826.185 kb on + strand, within ABID97_RS04025 at 826.185 kb on + strand, within ABID97_RS04025 at 826.338 kb on + strand, within ABID97_RS04025 at 826.338 kb on + strand, within ABID97_RS04025 at 826.411 kb on - strand, within ABID97_RS04025 at 826.476 kb on + strand, within ABID97_RS04025 at 826.476 kb on + strand, within ABID97_RS04025 at 826.725 kb on + strand, within ABID97_RS04025 at 826.726 kb on - strand, within ABID97_RS04025 at 826.726 kb on - strand, within ABID97_RS04025 at 827.232 kb on + strand, within ABID97_RS04030 at 827.232 kb on + strand, within ABID97_RS04030 at 827.233 kb on - strand, within ABID97_RS04030 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.759 kb on - strand, within ABID97_RS04035 at 828.762 kb on - strand, within ABID97_RS04035 at 828.762 kb on - strand, within ABID97_RS04035 at 828.882 kb on - strand, within ABID97_RS04035 at 828.893 kb on + strand, within ABID97_RS04035 at 828.894 kb on - strand, within ABID97_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 826,072 - ABID97_RS04025 0.28 -0.3 826,185 + ABID97_RS04025 0.39 -0.7 826,185 + ABID97_RS04025 0.39 +1.0 826,338 + ABID97_RS04025 0.53 +3.1 826,338 + ABID97_RS04025 0.53 -0.5 826,411 - ABID97_RS04025 0.60 -1.8 826,476 + ABID97_RS04025 0.66 +0.6 826,476 + ABID97_RS04025 0.66 +1.2 826,725 + ABID97_RS04025 0.89 -0.3 826,726 - ABID97_RS04025 0.89 -0.5 826,726 - ABID97_RS04025 0.89 +0.1 827,232 + ABID97_RS04030 0.34 -0.6 827,232 + ABID97_RS04030 0.34 +0.8 827,233 - ABID97_RS04030 0.34 -0.8 828,759 - ABID97_RS04035 0.55 -1.5 828,759 - ABID97_RS04035 0.55 +2.8 828,759 - ABID97_RS04035 0.55 +0.3 828,759 - ABID97_RS04035 0.55 -0.4 828,762 - ABID97_RS04035 0.55 +0.8 828,762 - ABID97_RS04035 0.55 +0.6 828,882 - ABID97_RS04035 0.64 +1.4 828,893 + ABID97_RS04035 0.64 -0.7 828,894 - ABID97_RS04035 0.64 -0.1
Or see this region's nucleotide sequence