Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04000 and ABID97_RS04005 are separated by 14 nucleotides ABID97_RS04005 and ABID97_RS04010 overlap by 4 nucleotides
ABID97_RS04000: ABID97_RS04000 - MlaD family protein, at 819,842 to 820,813
_RS04000
ABID97_RS04005: ABID97_RS04005 - ATP-binding cassette domain-containing protein, at 820,828 to 821,640
_RS04005
ABID97_RS04010: ABID97_RS04010 - ABC transporter permease, at 821,637 to 822,803
_RS04010
Position (kb) 820
821
822 Strain fitness (log2 ratio) -1
0
1
2 at 820.515 kb on + strand, within ABID97_RS04000 at 820.515 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.701 kb on + strand, within ABID97_RS04000 at 820.702 kb on - strand, within ABID97_RS04000 at 820.920 kb on - strand, within ABID97_RS04005 at 821.776 kb on + strand, within ABID97_RS04010 at 821.777 kb on - strand, within ABID97_RS04010 at 821.879 kb on - strand, within ABID97_RS04010 at 821.879 kb on - strand, within ABID97_RS04010 at 822.214 kb on + strand, within ABID97_RS04010 at 822.215 kb on - strand, within ABID97_RS04010 at 822.215 kb on - strand, within ABID97_RS04010 at 822.284 kb on - strand, within ABID97_RS04010 at 822.475 kb on + strand, within ABID97_RS04010 at 822.475 kb on + strand, within ABID97_RS04010 at 822.475 kb on + strand, within ABID97_RS04010 at 822.476 kb on - strand, within ABID97_RS04010 at 822.476 kb on - strand, within ABID97_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 820,515 + ABID97_RS04000 0.69 +0.8 820,515 + ABID97_RS04000 0.69 -0.1 820,701 + ABID97_RS04000 0.88 -0.1 820,701 + ABID97_RS04000 0.88 +0.1 820,701 + ABID97_RS04000 0.88 +0.1 820,701 + ABID97_RS04000 0.88 -0.7 820,702 - ABID97_RS04000 0.88 -0.7 820,920 - ABID97_RS04005 0.11 -1.1 821,776 + ABID97_RS04010 0.12 +0.3 821,777 - ABID97_RS04010 0.12 -0.2 821,879 - ABID97_RS04010 0.21 -0.5 821,879 - ABID97_RS04010 0.21 -0.4 822,214 + ABID97_RS04010 0.49 +1.0 822,215 - ABID97_RS04010 0.50 -0.6 822,215 - ABID97_RS04010 0.50 -0.1 822,284 - ABID97_RS04010 0.55 -0.1 822,475 + ABID97_RS04010 0.72 +0.2 822,475 + ABID97_RS04010 0.72 +1.8 822,475 + ABID97_RS04010 0.72 -0.2 822,476 - ABID97_RS04010 0.72 -0.4 822,476 - ABID97_RS04010 0.72 -0.4
Or see this region's nucleotide sequence