Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01570 and ABID97_RS01575 are separated by 50 nucleotides ABID97_RS01575 and ABID97_RS01580 are separated by 11 nucleotides
ABID97_RS01570: ABID97_RS01570 - LysR substrate-binding domain-containing protein, at 308,090 to 309,055
_RS01570
ABID97_RS01575: ABID97_RS01575 - ATP-dependent DNA helicase RecG, at 309,106 to 311,220
_RS01575
ABID97_RS01580: ABID97_RS01580 - TIGR01777 family oxidoreductase, at 311,232 to 312,728
_RS01580
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.127 kb on + strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.128 kb on - strand at 308.241 kb on + strand, within ABID97_RS01570 at 308.574 kb on + strand, within ABID97_RS01570 at 308.575 kb on - strand, within ABID97_RS01570 at 308.760 kb on + strand, within ABID97_RS01570 at 308.760 kb on + strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.761 kb on - strand, within ABID97_RS01570 at 308.979 kb on + strand at 308.980 kb on - strand at 308.980 kb on - strand at 308.980 kb on - strand at 308.980 kb on - strand at 308.980 kb on - strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.033 kb on + strand at 309.034 kb on - strand at 309.034 kb on - strand at 309.034 kb on - strand at 309.034 kb on - strand at 309.055 kb on + strand at 309.055 kb on + strand at 309.055 kb on + strand at 309.056 kb on - strand at 309.056 kb on - strand at 309.056 kb on - strand at 309.056 kb on - strand at 309.069 kb on + strand at 309.107 kb on + strand at 309.108 kb on - strand at 309.108 kb on - strand at 309.108 kb on - strand at 309.119 kb on + strand at 309.120 kb on - strand at 309.407 kb on + strand, within ABID97_RS01575 at 309.407 kb on + strand, within ABID97_RS01575 at 309.407 kb on + strand, within ABID97_RS01575 at 309.408 kb on - strand, within ABID97_RS01575 at 309.743 kb on + strand, within ABID97_RS01575 at 309.744 kb on - strand, within ABID97_RS01575 at 309.744 kb on - strand, within ABID97_RS01575 at 309.865 kb on + strand, within ABID97_RS01575 at 309.881 kb on + strand, within ABID97_RS01575 at 309.882 kb on - strand, within ABID97_RS01575 at 309.884 kb on + strand, within ABID97_RS01575 at 309.884 kb on + strand, within ABID97_RS01575 at 309.884 kb on + strand, within ABID97_RS01575 at 309.885 kb on - strand, within ABID97_RS01575 at 309.885 kb on - strand, within ABID97_RS01575 at 310.617 kb on - strand, within ABID97_RS01575 at 310.764 kb on - strand, within ABID97_RS01575 at 310.907 kb on + strand, within ABID97_RS01575 at 310.907 kb on + strand, within ABID97_RS01575 at 311.076 kb on - strand at 311.091 kb on - strand at 311.091 kb on - strand at 311.091 kb on - strand at 311.233 kb on + strand at 311.233 kb on + strand at 311.234 kb on - strand at 311.234 kb on - strand at 311.437 kb on - strand, within ABID97_RS01580 at 311.473 kb on + strand, within ABID97_RS01580 at 311.474 kb on - strand, within ABID97_RS01580 at 311.811 kb on + strand, within ABID97_RS01580 at 311.812 kb on + strand, within ABID97_RS01580 at 311.812 kb on + strand, within ABID97_RS01580 at 311.812 kb on + strand, within ABID97_RS01580 at 311.813 kb on - strand, within ABID97_RS01580 at 311.813 kb on - strand, within ABID97_RS01580 at 311.813 kb on - strand, within ABID97_RS01580 at 311.816 kb on - strand, within ABID97_RS01580 at 311.816 kb on - strand, within ABID97_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 308,127 + +0.5 308,127 + +0.6 308,127 + +0.2 308,127 + +0.6 308,127 + -0.2 308,128 - -0.6 308,128 - +0.1 308,128 - +0.1 308,128 - +0.1 308,128 - +0.1 308,128 - -0.2 308,128 - -1.0 308,128 - +0.5 308,128 - +0.2 308,128 - +0.6 308,241 + ABID97_RS01570 0.16 -1.2 308,574 + ABID97_RS01570 0.50 -0.7 308,575 - ABID97_RS01570 0.50 +0.3 308,760 + ABID97_RS01570 0.69 -0.8 308,760 + ABID97_RS01570 0.69 -0.3 308,761 - ABID97_RS01570 0.69 +0.4 308,761 - ABID97_RS01570 0.69 +0.8 308,761 - ABID97_RS01570 0.69 -0.3 308,761 - ABID97_RS01570 0.69 +0.0 308,979 + +0.3 308,980 - -0.2 308,980 - -0.4 308,980 - +0.1 308,980 - -0.4 308,980 - -1.1 309,033 + +0.7 309,033 + -0.1 309,033 + +0.5 309,033 + +0.3 309,033 + -0.3 309,034 - +0.8 309,034 - +0.6 309,034 - +1.3 309,034 - +0.4 309,055 + +1.2 309,055 + +0.3 309,055 + -0.1 309,056 - +0.5 309,056 - +0.3 309,056 - -0.2 309,056 - +0.3 309,069 + -0.2 309,107 + +1.8 309,108 - -0.9 309,108 - -0.1 309,108 - -1.5 309,119 + -0.2 309,120 - -0.3 309,407 + ABID97_RS01575 0.14 -0.8 309,407 + ABID97_RS01575 0.14 -0.8 309,407 + ABID97_RS01575 0.14 -1.4 309,408 - ABID97_RS01575 0.14 +0.5 309,743 + ABID97_RS01575 0.30 -0.6 309,744 - ABID97_RS01575 0.30 -0.5 309,744 - ABID97_RS01575 0.30 -0.8 309,865 + ABID97_RS01575 0.36 +0.2 309,881 + ABID97_RS01575 0.37 -1.8 309,882 - ABID97_RS01575 0.37 -0.8 309,884 + ABID97_RS01575 0.37 -1.5 309,884 + ABID97_RS01575 0.37 -1.2 309,884 + ABID97_RS01575 0.37 -1.0 309,885 - ABID97_RS01575 0.37 +0.0 309,885 - ABID97_RS01575 0.37 -2.1 310,617 - ABID97_RS01575 0.71 -0.4 310,764 - ABID97_RS01575 0.78 -1.3 310,907 + ABID97_RS01575 0.85 -0.5 310,907 + ABID97_RS01575 0.85 +1.4 311,076 - -1.0 311,091 - -1.3 311,091 - +1.8 311,091 - -0.4 311,233 + +0.1 311,233 + +0.3 311,234 - -0.7 311,234 - -1.4 311,437 - ABID97_RS01580 0.14 -0.5 311,473 + ABID97_RS01580 0.16 -0.1 311,474 - ABID97_RS01580 0.16 -0.5 311,811 + ABID97_RS01580 0.39 +0.6 311,812 + ABID97_RS01580 0.39 -0.1 311,812 + ABID97_RS01580 0.39 -0.6 311,812 + ABID97_RS01580 0.39 -0.1 311,813 - ABID97_RS01580 0.39 -0.6 311,813 - ABID97_RS01580 0.39 +0.5 311,813 - ABID97_RS01580 0.39 -1.1 311,816 - ABID97_RS01580 0.39 -0.4 311,816 - ABID97_RS01580 0.39 -0.1
Or see this region's nucleotide sequence