Experiment: Choline chloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_05086 and PFR28_05087 are separated by 233 nucleotides PFR28_05087 and PFR28_05088 are separated by 102 nucleotides
PFR28_05086: PFR28_05086 - putative FAD-dependent oxidoreductase, at 5,824,939 to 5,826,114
_05086
PFR28_05087: PFR28_05087 - Multidrug transporter, at 5,826,348 to 5,826,680
_05087
PFR28_05088: PFR28_05088 - HTH-type transcriptional regulator YhaJ, at 5,826,783 to 5,827,673
_05088
Position (kb) 5826
5827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5826.150 kb on + strand at 5826.150 kb on + strand at 5826.150 kb on + strand at 5826.150 kb on + strand at 5826.150 kb on + strand at 5826.151 kb on - strand at 5826.151 kb on - strand at 5826.151 kb on - strand at 5826.151 kb on - strand at 5826.151 kb on - strand at 5826.151 kb on - strand at 5826.151 kb on - strand at 5826.233 kb on - strand at 5826.323 kb on + strand at 5826.323 kb on + strand at 5826.323 kb on + strand at 5826.323 kb on + strand at 5826.324 kb on - strand at 5826.324 kb on - strand at 5826.324 kb on - strand at 5826.324 kb on - strand at 5826.446 kb on - strand, within PFR28_05087 at 5826.503 kb on - strand, within PFR28_05087 at 5826.579 kb on + strand, within PFR28_05087 at 5826.579 kb on + strand, within PFR28_05087 at 5826.579 kb on + strand, within PFR28_05087 at 5826.579 kb on + strand, within PFR28_05087 at 5826.580 kb on - strand, within PFR28_05087 at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.664 kb on + strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.665 kb on - strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.667 kb on + strand at 5826.668 kb on - strand at 5826.668 kb on - strand at 5826.668 kb on - strand at 5826.668 kb on - strand at 5826.668 kb on - strand at 5826.668 kb on - strand at 5826.670 kb on + strand at 5826.670 kb on + strand at 5826.670 kb on + strand at 5826.670 kb on + strand at 5826.670 kb on + strand at 5826.670 kb on + strand at 5826.671 kb on - strand at 5826.671 kb on - strand at 5826.671 kb on - strand at 5826.671 kb on - strand at 5826.671 kb on - strand at 5826.725 kb on - strand at 5826.725 kb on - strand at 5826.766 kb on + strand at 5827.192 kb on + strand, within PFR28_05088 at 5827.192 kb on + strand, within PFR28_05088 at 5827.192 kb on + strand, within PFR28_05088 at 5827.192 kb on + strand, within PFR28_05088 at 5827.192 kb on + strand, within PFR28_05088 at 5827.193 kb on - strand, within PFR28_05088 at 5827.193 kb on - strand, within PFR28_05088 at 5827.193 kb on - strand, within PFR28_05088 at 5827.193 kb on - strand, within PFR28_05088 at 5827.193 kb on - strand, within PFR28_05088 at 5827.240 kb on - strand, within PFR28_05088 at 5827.240 kb on - strand, within PFR28_05088 at 5827.338 kb on + strand, within PFR28_05088 at 5827.338 kb on + strand, within PFR28_05088 at 5827.338 kb on + strand, within PFR28_05088 at 5827.338 kb on + strand, within PFR28_05088 at 5827.338 kb on + strand, within PFR28_05088 at 5827.339 kb on - strand, within PFR28_05088 at 5827.339 kb on - strand, within PFR28_05088 at 5827.401 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.452 kb on + strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.453 kb on - strand, within PFR28_05088 at 5827.519 kb on - strand, within PFR28_05088 at 5827.527 kb on + strand, within PFR28_05088 at 5827.528 kb on - strand, within PFR28_05088
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride (C) remove 5,826,150 + +0.5 5,826,150 + +1.2 5,826,150 + -0.6 5,826,150 + +0.2 5,826,150 + +0.2 5,826,151 - -0.1 5,826,151 - +0.4 5,826,151 - -0.7 5,826,151 - -0.2 5,826,151 - -0.4 5,826,151 - -0.3 5,826,151 - -2.2 5,826,233 - -0.8 5,826,323 + -0.4 5,826,323 + -0.4 5,826,323 + -0.0 5,826,323 + +3.2 5,826,324 - +0.3 5,826,324 - +1.1 5,826,324 - -0.7 5,826,324 - -0.3 5,826,446 - PFR28_05087 0.29 -1.3 5,826,503 - PFR28_05087 0.47 -1.3 5,826,579 + PFR28_05087 0.69 -0.7 5,826,579 + PFR28_05087 0.69 -1.1 5,826,579 + PFR28_05087 0.69 -2.1 5,826,579 + PFR28_05087 0.69 +0.0 5,826,580 - PFR28_05087 0.70 -0.5 5,826,664 + -0.4 5,826,664 + -1.7 5,826,664 + -2.3 5,826,664 + +0.0 5,826,664 + -2.3 5,826,664 + -1.7 5,826,664 + -1.2 5,826,664 + -1.8 5,826,665 - -2.3 5,826,665 - -2.0 5,826,665 - +0.5 5,826,665 - -0.9 5,826,665 - -0.5 5,826,665 - -0.3 5,826,665 - -2.2 5,826,665 - +3.2 5,826,665 - +0.8 5,826,667 + -0.9 5,826,667 + -1.0 5,826,667 + -1.3 5,826,667 + -2.3 5,826,667 + -2.1 5,826,667 + -0.4 5,826,667 + -1.4 5,826,667 + -0.9 5,826,667 + -1.2 5,826,667 + -0.9 5,826,667 + -1.1 5,826,667 + +0.2 5,826,667 + -1.1 5,826,667 + -2.5 5,826,667 + -0.8 5,826,668 - -1.5 5,826,668 - -2.7 5,826,668 - -3.2 5,826,668 - -1.2 5,826,668 - +0.8 5,826,668 - -2.2 5,826,670 + -1.2 5,826,670 + -0.6 5,826,670 + +0.3 5,826,670 + +0.3 5,826,670 + -1.2 5,826,670 + -0.3 5,826,671 - -0.0 5,826,671 - -1.9 5,826,671 - -1.2 5,826,671 - -0.7 5,826,671 - -0.0 5,826,725 - -1.1 5,826,725 - -1.0 5,826,766 + -0.0 5,827,192 + PFR28_05088 0.46 -1.5 5,827,192 + PFR28_05088 0.46 -0.2 5,827,192 + PFR28_05088 0.46 -0.2 5,827,192 + PFR28_05088 0.46 +0.3 5,827,192 + PFR28_05088 0.46 +0.0 5,827,193 - PFR28_05088 0.46 -1.2 5,827,193 - PFR28_05088 0.46 -0.2 5,827,193 - PFR28_05088 0.46 +0.1 5,827,193 - PFR28_05088 0.46 +0.6 5,827,193 - PFR28_05088 0.46 +0.2 5,827,240 - PFR28_05088 0.51 -0.2 5,827,240 - PFR28_05088 0.51 +0.6 5,827,338 + PFR28_05088 0.62 -0.1 5,827,338 + PFR28_05088 0.62 -1.0 5,827,338 + PFR28_05088 0.62 +0.4 5,827,338 + PFR28_05088 0.62 +0.7 5,827,338 + PFR28_05088 0.62 -1.2 5,827,339 - PFR28_05088 0.62 +0.3 5,827,339 - PFR28_05088 0.62 +1.0 5,827,401 + PFR28_05088 0.69 +0.4 5,827,452 + PFR28_05088 0.75 +0.6 5,827,452 + PFR28_05088 0.75 -0.1 5,827,452 + PFR28_05088 0.75 -0.5 5,827,452 + PFR28_05088 0.75 +0.1 5,827,452 + PFR28_05088 0.75 +0.5 5,827,452 + PFR28_05088 0.75 +1.4 5,827,452 + PFR28_05088 0.75 +0.2 5,827,452 + PFR28_05088 0.75 +0.3 5,827,452 + PFR28_05088 0.75 +0.7 5,827,452 + PFR28_05088 0.75 -1.2 5,827,452 + PFR28_05088 0.75 -0.2 5,827,452 + PFR28_05088 0.75 +1.1 5,827,452 + PFR28_05088 0.75 -0.1 5,827,452 + PFR28_05088 0.75 +0.4 5,827,452 + PFR28_05088 0.75 +0.8 5,827,452 + PFR28_05088 0.75 +0.1 5,827,452 + PFR28_05088 0.75 -1.2 5,827,452 + PFR28_05088 0.75 -0.2 5,827,452 + PFR28_05088 0.75 -1.0 5,827,453 - PFR28_05088 0.75 +0.0 5,827,453 - PFR28_05088 0.75 -0.3 5,827,453 - PFR28_05088 0.75 +0.6 5,827,453 - PFR28_05088 0.75 -1.0 5,827,453 - PFR28_05088 0.75 -0.2 5,827,453 - PFR28_05088 0.75 +1.2 5,827,453 - PFR28_05088 0.75 -0.6 5,827,453 - PFR28_05088 0.75 -1.3 5,827,453 - PFR28_05088 0.75 +0.3 5,827,453 - PFR28_05088 0.75 +1.2 5,827,519 - PFR28_05088 0.83 -2.0 5,827,527 + PFR28_05088 0.84 +0.6 5,827,528 - PFR28_05088 0.84 +1.1
Or see this region's nucleotide sequence