Strain Fitness in Pseudomonas sp. RS175 around PFR28_04467

Experiment: Choline chloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride (C)
5,086,603	+		PFR28_04465	0.77	-0.0
5,086,603	+		PFR28_04465	0.77	-0.2
5,086,603	+		PFR28_04465	0.77	-0.2
5,086,603	+		PFR28_04465	0.77	-0.0
5,086,603	+		PFR28_04465	0.77	-1.5
5,086,603	+		PFR28_04465	0.77	-0.8
5,086,603	+		PFR28_04465	0.77	-2.0
5,086,603	+		PFR28_04465	0.77	-0.3
5,086,603	+		PFR28_04465	0.77	+0.3
5,086,603	+		PFR28_04465	0.77	+0.9
5,086,604	-		PFR28_04465	0.78	-1.3
5,086,604	-		PFR28_04465	0.78	-0.6
5,086,604	-		PFR28_04465	0.78	-1.2
5,086,604	-		PFR28_04465	0.78	+0.6
5,086,604	-		PFR28_04465	0.78	+0.6
5,086,604	-		PFR28_04465	0.78	-0.9
5,086,604	-		PFR28_04465	0.78	-1.6
5,086,604	-		PFR28_04465	0.78	-0.1
5,086,604	-		PFR28_04465	0.78	-0.2
5,086,792	+		PFR28_04465	0.87	+1.0
5,086,792	+		PFR28_04465	0.87	+0.2
5,086,792	+		PFR28_04465	0.87	-0.3
5,086,792	+		PFR28_04465	0.87	-0.2
5,086,792	+		PFR28_04465	0.87	-2.1
5,086,792	+		PFR28_04465	0.87	-1.4
5,086,792	+		PFR28_04465	0.87	-0.6
5,086,793	-		PFR28_04465	0.87	+0.1
5,086,793	-		PFR28_04465	0.87	-1.1
5,086,793	-		PFR28_04465	0.87	+0.4
5,086,793	-		PFR28_04465	0.87	-0.6
5,086,793	-		PFR28_04465	0.87	-1.1
5,086,793	-		PFR28_04465	0.87	-0.1
5,086,793	-		PFR28_04465	0.87	-0.3
5,086,793	-		PFR28_04465	0.87	-0.6
5,086,826	+		PFR28_04465	0.89	+0.0
5,086,826	+		PFR28_04465	0.89	+0.4
5,086,897	+				-0.4
5,086,897	+				+3.2
5,086,898	-				-0.8
5,087,035	+				+1.9
5,087,035	+				+0.3
5,087,035	+				+0.2
5,087,036	-				-0.1
5,087,036	-				-0.0
5,087,124	+		PFR28_04466	0.16	+0.9
5,087,124	+		PFR28_04466	0.16	-0.7
5,087,124	+		PFR28_04466	0.16	-1.3
5,087,125	-		PFR28_04466	0.16	-0.6
5,087,125	-		PFR28_04466	0.16	-1.2
5,087,404	+		PFR28_04466	0.80	+0.8
5,087,404	+		PFR28_04466	0.80	-1.0
5,087,404	+		PFR28_04466	0.80	-0.0
5,087,405	-		PFR28_04466	0.80	-0.3
5,087,405	-		PFR28_04466	0.80	-0.0
5,087,405	-		PFR28_04466	0.80	+0.4
5,087,759	+				-0.7
5,088,342	+		PFR28_04467	0.19	-0.8
5,088,343	-		PFR28_04467	0.19	-0.7
5,088,484	+		PFR28_04467	0.22	-1.6
5,088,484	+		PFR28_04467	0.22	+0.5
5,088,484	+		PFR28_04467	0.22	+1.2
5,088,484	+		PFR28_04467	0.22	+0.5
5,088,484	+		PFR28_04467	0.22	+0.4
5,088,484	+		PFR28_04467	0.22	-0.1
5,088,484	+		PFR28_04467	0.22	+1.7
5,088,485	-		PFR28_04467	0.22	+0.1
5,088,485	-		PFR28_04467	0.22	-0.5
5,088,485	-		PFR28_04467	0.22	-0.4
5,088,485	-		PFR28_04467	0.22	-0.6
5,088,486	+		PFR28_04467	0.22	+1.0
5,088,486	+		PFR28_04467	0.22	-0.6
5,088,541	+		PFR28_04467	0.23	+0.1
5,088,542	-		PFR28_04467	0.23	-0.3
5,088,548	+		PFR28_04467	0.24	-0.2
5,088,730	+		PFR28_04467	0.28	-0.3
5,088,730	+		PFR28_04467	0.28	-2.3
5,088,869	+		PFR28_04467	0.31	+1.2
5,088,869	+		PFR28_04467	0.31	+1.6
5,088,870	-		PFR28_04467	0.31	+0.1
5,088,870	-		PFR28_04467	0.31	-0.3
5,088,870	-		PFR28_04467	0.31	+0.6
5,088,886	+		PFR28_04467	0.31	+0.1
5,088,886	+		PFR28_04467	0.31	-0.9
5,088,886	+		PFR28_04467	0.31	-0.1
5,088,887	-		PFR28_04467	0.31	+0.1
5,088,887	-		PFR28_04467	0.31	-1.4
5,089,030	+		PFR28_04467	0.34	+0.5
5,089,030	+		PFR28_04467	0.34	+0.8
5,089,031	-		PFR28_04467	0.34	+0.8
5,089,158	+		PFR28_04467	0.37	-1.1
5,089,159	-		PFR28_04467	0.37	-0.6
5,089,159	-		PFR28_04467	0.37	+0.1
5,089,162	+		PFR28_04467	0.37	+0.1
5,089,163	-		PFR28_04467	0.37	-0.8
5,089,163	-		PFR28_04467	0.37	-1.7
5,089,174	+		PFR28_04467	0.38	+0.3
5,089,174	+		PFR28_04467	0.38	-2.5
5,089,174	+		PFR28_04467	0.38	-0.1
5,089,174	+		PFR28_04467	0.38	+0.5
5,089,174	+		PFR28_04467	0.38	-1.2
5,089,175	-		PFR28_04467	0.38	+0.8
5,089,175	-		PFR28_04467	0.38	-0.2
5,089,175	-		PFR28_04467	0.38	-0.5
5,089,175	-		PFR28_04467	0.38	+1.1
5,089,175	-		PFR28_04467	0.38	-2.4
5,089,175	-		PFR28_04467	0.38	-0.7
5,089,175	-		PFR28_04467	0.38	-0.6
5,089,175	-		PFR28_04467	0.38	-0.2
5,089,364	-		PFR28_04467	0.42	-0.5
5,089,486	+		PFR28_04467	0.45	-0.8
5,089,493	-		PFR28_04467	0.45	-0.0
5,089,556	-		PFR28_04467	0.46	+0.8
5,089,682	-		PFR28_04467	0.49	-0.2
5,089,682	-		PFR28_04467	0.49	-0.5
5,089,682	-		PFR28_04467	0.49	-1.1
5,089,744	+		PFR28_04467	0.50	-1.6
5,089,745	-		PFR28_04467	0.50	+0.3
5,089,745	-		PFR28_04467	0.50	-0.5
5,089,802	-		PFR28_04467	0.52	+1.6
5,089,933	+		PFR28_04467	0.55	+0.4
5,089,934	-		PFR28_04467	0.55	+0.2
5,089,934	-		PFR28_04467	0.55	+0.1
5,089,934	-		PFR28_04467	0.55	+0.2
5,089,934	-		PFR28_04467	0.55	+0.2
5,089,942	+		PFR28_04467	0.55	+0.3
5,089,984	+		PFR28_04467	0.56	+1.6
5,089,985	-		PFR28_04467	0.56	+0.2
5,090,053	+		PFR28_04467	0.57	+0.6
5,090,053	+		PFR28_04467	0.57	+1.0
5,090,054	-		PFR28_04467	0.57	+1.2
5,090,059	+		PFR28_04467	0.58	+0.8
5,090,059	+		PFR28_04467	0.58	-0.3
5,090,059	+		PFR28_04467	0.58	-0.8
5,090,059	+		PFR28_04467	0.58	-0.7
5,090,060	-		PFR28_04467	0.58	-1.3
5,090,060	-		PFR28_04467	0.58	-0.4
5,090,060	-		PFR28_04467	0.58	-0.3
5,090,060	-		PFR28_04467	0.58	-1.9
5,090,296	+		PFR28_04467	0.63	-0.0
5,090,296	+		PFR28_04467	0.63	+0.9
5,090,296	+		PFR28_04467	0.63	+0.6
5,090,296	+		PFR28_04467	0.63	+1.6
5,090,296	+		PFR28_04467	0.63	+0.3
5,090,297	-		PFR28_04467	0.63	-0.8
5,090,297	-		PFR28_04467	0.63	-1.2
5,090,297	-		PFR28_04467	0.63	-0.0
5,090,297	-		PFR28_04467	0.63	-0.5
5,090,357	-		PFR28_04467	0.64	-1.2
5,090,422	+		PFR28_04467	0.66	-0.3
5,090,422	+		PFR28_04467	0.66	+0.3
5,090,423	-		PFR28_04467	0.66	-0.1
5,090,423	-		PFR28_04467	0.66	+0.0
5,090,504	+		PFR28_04467	0.68	+1.2
5,090,505	-		PFR28_04467	0.68	+0.3
5,090,543	-		PFR28_04467	0.68	-0.8
5,090,613	-		PFR28_04467	0.70	+0.9
5,090,613	-		PFR28_04467	0.70	+0.0
5,090,632	+		PFR28_04467	0.70	-1.0
5,090,704	+		PFR28_04467	0.72	+0.2
5,090,704	+		PFR28_04467	0.72	+0.2
5,090,705	-		PFR28_04467	0.72	-1.2
5,090,705	-		PFR28_04467	0.72	-0.3
5,090,770	+		PFR28_04467	0.74	-0.0
5,090,771	-		PFR28_04467	0.74	-0.5
5,090,842	+		PFR28_04467	0.75	-0.5
5,090,842	+		PFR28_04467	0.75	+0.4
5,090,927	-		PFR28_04467	0.77	+0.2
5,090,927	-		PFR28_04467	0.77	+0.8
5,090,989	+		PFR28_04467	0.78	-0.1
5,090,989	+		PFR28_04467	0.78	-0.8
5,090,989	+		PFR28_04467	0.78	+1.1
5,090,989	+		PFR28_04467	0.78	-0.9
5,090,989	+		PFR28_04467	0.78	-1.8
5,090,989	+		PFR28_04467	0.78	-0.5
5,090,989	+		PFR28_04467	0.78	-0.6
5,090,990	-		PFR28_04467	0.78	-0.6
5,090,990	-		PFR28_04467	0.78	-0.4
5,090,990	-		PFR28_04467	0.78	-0.5
5,090,990	-		PFR28_04467	0.78	-0.5
5,090,990	-		PFR28_04467	0.78	-3.2
5,091,025	+		PFR28_04467	0.79	+0.1
5,091,064	-		PFR28_04467	0.80	-1.0
5,091,086	+		PFR28_04467	0.81	-1.2
5,091,086	+		PFR28_04467	0.81	-0.5
5,091,118	+		PFR28_04467	0.81	-0.1
5,091,118	+		PFR28_04467	0.81	+1.9
5,091,119	-		PFR28_04467	0.81	-1.0
5,091,119	-		PFR28_04467	0.81	+0.8
5,091,124	+		PFR28_04467	0.81	-0.5
5,091,125	-		PFR28_04467	0.82	-0.2
5,091,125	-		PFR28_04467	0.82	-1.0
5,091,125	-		PFR28_04467	0.82	-1.0
5,091,193	+		PFR28_04467	0.83	-0.0
5,091,194	-		PFR28_04467	0.83	-0.5
5,091,265	+		PFR28_04467	0.85	-0.5
5,091,266	-		PFR28_04467	0.85	-1.1
5,091,346	+		PFR28_04467	0.86	+0.5
5,091,346	+		PFR28_04467	0.86	+1.6
5,091,373	+		PFR28_04467	0.87	+1.1
5,091,373	+		PFR28_04467	0.87	+1.8
5,091,373	+		PFR28_04467	0.87	-1.0
5,091,373	+		PFR28_04467	0.87	+0.6
5,091,373	+		PFR28_04467	0.87	+1.2
5,091,373	+		PFR28_04467	0.87	+0.4
5,091,373	+		PFR28_04467	0.87	-0.1
5,091,374	-		PFR28_04467	0.87	-1.2
5,091,374	-		PFR28_04467	0.87	-0.1
5,091,374	-		PFR28_04467	0.87	+1.6
5,091,374	-		PFR28_04467	0.87	+2.4
5,091,374	-		PFR28_04467	0.87	-0.8
5,091,391	+		PFR28_04467	0.88	-1.7
5,091,392	-		PFR28_04467	0.88	-0.2
5,091,458	-		PFR28_04467	0.89	+0.1
5,091,458	-		PFR28_04467	0.89	-0.7
5,091,600	+				-0.2
5,091,600	+				-0.1
5,091,600	+				-0.0
5,091,601	-				-1.2
5,091,601	-				+0.3
5,091,601	-				-0.5
5,091,601	-				+0.5
5,091,601	-				-0.5
5,091,629	-				-0.2
5,091,629	-				-1.5
5,091,630	+				-2.3
5,091,630	+				+0.8
5,091,655	+				-0.4
5,091,829	+				-1.6
5,091,829	+				+1.4
5,091,829	+				+1.0
5,091,830	-				-1.8
5,091,830	-				-1.0
5,091,830	-				-0.2
5,091,830	-				+0.3
5,091,830	-				+0.2
5,091,830	-				-2.2
5,091,875	-				-1.4
5,092,264	+				-0.3
5,092,264	+				-0.1
5,092,264	+				-0.9
5,092,264	+				-1.1
5,092,264	+				-0.0
5,092,265	-				-0.0
5,092,265	-				-0.5
5,092,265	-				-1.0
5,092,265	-				-0.2
5,092,265	-				-0.1
5,092,304	+				-0.4
5,092,304	+				-2.2
5,092,305	-				+1.2
5,092,305	-				-0.0
5,092,311	+				-1.0
5,092,312	-				+0.0
5,092,312	-				-0.9
5,092,568	+				-1.3