Strain Fitness in Pseudomonas sp. RS175 around PFR28_04465

Experiment: Choline chloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04464 and PFR28_04465 are separated by 186 nucleotidesPFR28_04465 and PFR28_04466 are separated by 18 nucleotidesPFR28_04466 and PFR28_04467 are separated by 12 nucleotides PFR28_04464: PFR28_04464 - Protein ClpV1, at 5,082,241 to 5,084,919 _04464 PFR28_04465: PFR28_04465 - Actin cross-linking toxin VgrG1, at 5,085,106 to 5,087,037 _04465 PFR28_04466: PFR28_04466 - hypothetical protein, at 5,087,056 to 5,087,490 _04466 PFR28_04467: PFR28_04467 - hypothetical protein, at 5,087,503 to 5,091,945 _04467 Position (kb) 5085 5086 5087 5088Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5084.114 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.182 kb on + strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.183 kb on - strand, within PFR28_04464at 5084.272 kb on + strand, within PFR28_04464at 5084.273 kb on - strand, within PFR28_04464at 5084.297 kb on + strand, within PFR28_04464at 5084.297 kb on + strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.298 kb on - strand, within PFR28_04464at 5084.326 kb on + strand, within PFR28_04464at 5084.327 kb on - strand, within PFR28_04464at 5084.611 kb on + strand, within PFR28_04464at 5084.611 kb on + strand, within PFR28_04464at 5084.611 kb on + strand, within PFR28_04464at 5084.614 kb on + strand, within PFR28_04464at 5084.615 kb on - strand, within PFR28_04464at 5084.695 kb on - strandat 5084.711 kb on - strandat 5084.929 kb on + strandat 5084.929 kb on + strandat 5084.929 kb on + strandat 5084.929 kb on + strandat 5084.930 kb on - strandat 5084.930 kb on - strandat 5084.930 kb on - strandat 5084.930 kb on - strandat 5084.981 kb on + strandat 5084.989 kb on + strandat 5084.990 kb on - strandat 5085.087 kb on + strandat 5085.088 kb on - strandat 5085.088 kb on - strandat 5085.088 kb on - strandat 5085.110 kb on + strandat 5085.111 kb on - strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.217 kb on + strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.218 kb on - strandat 5085.379 kb on + strand, within PFR28_04465at 5085.379 kb on + strand, within PFR28_04465at 5085.380 kb on - strand, within PFR28_04465at 5085.435 kb on + strand, within PFR28_04465at 5085.435 kb on + strand, within PFR28_04465at 5085.435 kb on + strand, within PFR28_04465at 5085.554 kb on - strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.607 kb on + strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.608 kb on - strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.610 kb on + strand, within PFR28_04465at 5085.611 kb on - strand, within PFR28_04465at 5085.611 kb on - strand, within PFR28_04465at 5085.611 kb on - strand, within PFR28_04465at 5085.704 kb on - strand, within PFR28_04465at 5085.704 kb on - strand, within PFR28_04465at 5085.704 kb on - strand, within PFR28_04465at 5085.707 kb on - strand, within PFR28_04465at 5085.881 kb on - strand, within PFR28_04465at 5085.887 kb on - strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.898 kb on + strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.899 kb on - strand, within PFR28_04465at 5085.925 kb on + strand, within PFR28_04465at 5085.925 kb on + strand, within PFR28_04465at 5085.925 kb on + strand, within PFR28_04465at 5085.926 kb on - strand, within PFR28_04465at 5085.926 kb on - strand, within PFR28_04465at 5085.926 kb on - strand, within PFR28_04465at 5085.926 kb on - strand, within PFR28_04465at 5086.057 kb on + strand, within PFR28_04465at 5086.078 kb on + strand, within PFR28_04465at 5086.079 kb on - strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.081 kb on + strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.082 kb on - strand, within PFR28_04465at 5086.291 kb on + strand, within PFR28_04465at 5086.291 kb on + strand, within PFR28_04465at 5086.462 kb on + strand, within PFR28_04465at 5086.462 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.603 kb on + strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.604 kb on - strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.792 kb on + strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.793 kb on - strand, within PFR28_04465at 5086.826 kb on + strand, within PFR28_04465at 5086.826 kb on + strand, within PFR28_04465at 5086.897 kb on + strandat 5086.897 kb on + strandat 5086.898 kb on - strandat 5087.035 kb on + strandat 5087.035 kb on + strandat 5087.035 kb on + strandat 5087.036 kb on - strandat 5087.036 kb on - strandat 5087.124 kb on + strand, within PFR28_04466at 5087.124 kb on + strand, within PFR28_04466at 5087.124 kb on + strand, within PFR28_04466at 5087.125 kb on - strand, within PFR28_04466at 5087.125 kb on - strand, within PFR28_04466at 5087.404 kb on + strand, within PFR28_04466at 5087.404 kb on + strand, within PFR28_04466at 5087.404 kb on + strand, within PFR28_04466at 5087.405 kb on - strand, within PFR28_04466at 5087.405 kb on - strand, within PFR28_04466at 5087.405 kb on - strand, within PFR28_04466at 5087.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride (C)
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5,084,114 + PFR28_04464 0.70 -1.2
5,084,182 + PFR28_04464 0.72 +0.2
5,084,182 + PFR28_04464 0.72 -2.8
5,084,182 + PFR28_04464 0.72 -1.2
5,084,182 + PFR28_04464 0.72 -0.8
5,084,182 + PFR28_04464 0.72 -0.1
5,084,182 + PFR28_04464 0.72 +0.4
5,084,182 + PFR28_04464 0.72 -2.0
5,084,182 + PFR28_04464 0.72 -1.2
5,084,182 + PFR28_04464 0.72 +0.5
5,084,183 - PFR28_04464 0.72 -0.2
5,084,183 - PFR28_04464 0.72 -0.2
5,084,183 - PFR28_04464 0.72 -2.2
5,084,183 - PFR28_04464 0.72 -0.3
5,084,272 + PFR28_04464 0.76 -1.2
5,084,273 - PFR28_04464 0.76 -1.2
5,084,297 + PFR28_04464 0.77 -1.8
5,084,297 + PFR28_04464 0.77 -1.6
5,084,298 - PFR28_04464 0.77 -0.1
5,084,298 - PFR28_04464 0.77 +0.1
5,084,298 - PFR28_04464 0.77 -2.3
5,084,298 - PFR28_04464 0.77 -1.3
5,084,298 - PFR28_04464 0.77 +2.1
5,084,326 + PFR28_04464 0.78 -1.2
5,084,327 - PFR28_04464 0.78 +0.9
5,084,611 + PFR28_04464 0.88 +0.1
5,084,611 + PFR28_04464 0.88 -0.2
5,084,611 + PFR28_04464 0.88 +0.2
5,084,614 + PFR28_04464 0.89 -0.3
5,084,615 - PFR28_04464 0.89 -0.7
5,084,695 - -1.3
5,084,711 - +0.3
5,084,929 + -1.2
5,084,929 + +0.1
5,084,929 + -0.3
5,084,929 + +0.4
5,084,930 - -0.5
5,084,930 - +0.9
5,084,930 - +0.2
5,084,930 - +0.1
5,084,981 + +0.1
5,084,989 + -0.1
5,084,990 - -2.8
5,085,087 + -1.1
5,085,088 - -0.4
5,085,088 - -0.3
5,085,088 - +0.8
5,085,110 + +0.6
5,085,111 - -0.3
5,085,217 + -0.1
5,085,217 + -1.4
5,085,217 + +0.7
5,085,217 + -1.3
5,085,217 + -0.2
5,085,217 + +0.5
5,085,217 + -2.8
5,085,217 + -0.2
5,085,218 - -0.6
5,085,218 - +0.7
5,085,218 - -0.7
5,085,218 - -1.2
5,085,218 - -0.9
5,085,218 - -0.7
5,085,218 - -0.2
5,085,379 + PFR28_04465 0.14 +0.1
5,085,379 + PFR28_04465 0.14 -0.6
5,085,380 - PFR28_04465 0.14 -1.2
5,085,435 + PFR28_04465 0.17 -0.6
5,085,435 + PFR28_04465 0.17 -0.0
5,085,435 + PFR28_04465 0.17 +0.6
5,085,554 - PFR28_04465 0.23 -1.2
5,085,607 + PFR28_04465 0.26 -0.6
5,085,607 + PFR28_04465 0.26 -0.4
5,085,607 + PFR28_04465 0.26 -0.2
5,085,607 + PFR28_04465 0.26 -2.7
5,085,607 + PFR28_04465 0.26 -0.4
5,085,607 + PFR28_04465 0.26 +0.2
5,085,607 + PFR28_04465 0.26 -0.2
5,085,607 + PFR28_04465 0.26 -1.5
5,085,607 + PFR28_04465 0.26 -0.8
5,085,607 + PFR28_04465 0.26 +1.0
5,085,608 - PFR28_04465 0.26 -0.5
5,085,608 - PFR28_04465 0.26 +0.7
5,085,608 - PFR28_04465 0.26 -1.8
5,085,608 - PFR28_04465 0.26 -0.7
5,085,608 - PFR28_04465 0.26 +0.4
5,085,608 - PFR28_04465 0.26 +0.2
5,085,610 + PFR28_04465 0.26 -0.6
5,085,610 + PFR28_04465 0.26 +1.1
5,085,610 + PFR28_04465 0.26 +0.3
5,085,610 + PFR28_04465 0.26 +0.6
5,085,610 + PFR28_04465 0.26 -0.1
5,085,610 + PFR28_04465 0.26 +0.3
5,085,611 - PFR28_04465 0.26 -0.5
5,085,611 - PFR28_04465 0.26 -1.0
5,085,611 - PFR28_04465 0.26 -0.4
5,085,704 - PFR28_04465 0.31 +0.5
5,085,704 - PFR28_04465 0.31 +0.4
5,085,704 - PFR28_04465 0.31 +1.4
5,085,707 - PFR28_04465 0.31 +0.3
5,085,881 - PFR28_04465 0.40 -1.0
5,085,887 - PFR28_04465 0.40 +0.4
5,085,898 + PFR28_04465 0.41 +0.1
5,085,898 + PFR28_04465 0.41 -0.4
5,085,898 + PFR28_04465 0.41 +0.0
5,085,898 + PFR28_04465 0.41 -0.4
5,085,899 - PFR28_04465 0.41 +0.9
5,085,899 - PFR28_04465 0.41 +0.6
5,085,899 - PFR28_04465 0.41 -0.5
5,085,899 - PFR28_04465 0.41 -1.8
5,085,899 - PFR28_04465 0.41 -1.2
5,085,899 - PFR28_04465 0.41 -0.6
5,085,899 - PFR28_04465 0.41 +0.6
5,085,899 - PFR28_04465 0.41 -1.8
5,085,899 - PFR28_04465 0.41 -1.0
5,085,925 + PFR28_04465 0.42 -0.5
5,085,925 + PFR28_04465 0.42 +0.3
5,085,925 + PFR28_04465 0.42 -0.1
5,085,926 - PFR28_04465 0.42 -0.1
5,085,926 - PFR28_04465 0.42 -0.2
5,085,926 - PFR28_04465 0.42 +0.3
5,085,926 - PFR28_04465 0.42 +0.4
5,086,057 + PFR28_04465 0.49 -0.7
5,086,078 + PFR28_04465 0.50 -0.4
5,086,079 - PFR28_04465 0.50 -0.0
5,086,081 + PFR28_04465 0.50 -1.7
5,086,081 + PFR28_04465 0.50 -0.1
5,086,081 + PFR28_04465 0.50 +0.1
5,086,081 + PFR28_04465 0.50 -0.3
5,086,081 + PFR28_04465 0.50 -1.2
5,086,082 - PFR28_04465 0.51 +0.0
5,086,082 - PFR28_04465 0.51 +0.5
5,086,082 - PFR28_04465 0.51 +0.6
5,086,082 - PFR28_04465 0.51 -0.6
5,086,082 - PFR28_04465 0.51 +0.1
5,086,082 - PFR28_04465 0.51 -0.2
5,086,291 + PFR28_04465 0.61 -0.7
5,086,291 + PFR28_04465 0.61 +0.2
5,086,462 + PFR28_04465 0.70 -0.5
5,086,462 + PFR28_04465 0.70 -2.1
5,086,603 + PFR28_04465 0.77 -0.0
5,086,603 + PFR28_04465 0.77 -0.2
5,086,603 + PFR28_04465 0.77 -0.2
5,086,603 + PFR28_04465 0.77 -0.0
5,086,603 + PFR28_04465 0.77 -1.5
5,086,603 + PFR28_04465 0.77 -0.8
5,086,603 + PFR28_04465 0.77 -2.0
5,086,603 + PFR28_04465 0.77 -0.3
5,086,603 + PFR28_04465 0.77 +0.3
5,086,603 + PFR28_04465 0.77 +0.9
5,086,604 - PFR28_04465 0.78 -1.3
5,086,604 - PFR28_04465 0.78 -0.6
5,086,604 - PFR28_04465 0.78 -1.2
5,086,604 - PFR28_04465 0.78 +0.6
5,086,604 - PFR28_04465 0.78 +0.6
5,086,604 - PFR28_04465 0.78 -0.9
5,086,604 - PFR28_04465 0.78 -1.6
5,086,604 - PFR28_04465 0.78 -0.1
5,086,604 - PFR28_04465 0.78 -0.2
5,086,792 + PFR28_04465 0.87 +1.0
5,086,792 + PFR28_04465 0.87 +0.2
5,086,792 + PFR28_04465 0.87 -0.3
5,086,792 + PFR28_04465 0.87 -0.2
5,086,792 + PFR28_04465 0.87 -2.1
5,086,792 + PFR28_04465 0.87 -1.4
5,086,792 + PFR28_04465 0.87 -0.6
5,086,793 - PFR28_04465 0.87 +0.1
5,086,793 - PFR28_04465 0.87 -1.1
5,086,793 - PFR28_04465 0.87 +0.4
5,086,793 - PFR28_04465 0.87 -0.6
5,086,793 - PFR28_04465 0.87 -1.1
5,086,793 - PFR28_04465 0.87 -0.1
5,086,793 - PFR28_04465 0.87 -0.3
5,086,793 - PFR28_04465 0.87 -0.6
5,086,826 + PFR28_04465 0.89 +0.0
5,086,826 + PFR28_04465 0.89 +0.4
5,086,897 + -0.4
5,086,897 + +3.2
5,086,898 - -0.8
5,087,035 + +1.9
5,087,035 + +0.3
5,087,035 + +0.2
5,087,036 - -0.1
5,087,036 - -0.0
5,087,124 + PFR28_04466 0.16 +0.9
5,087,124 + PFR28_04466 0.16 -0.7
5,087,124 + PFR28_04466 0.16 -1.3
5,087,125 - PFR28_04466 0.16 -0.6
5,087,125 - PFR28_04466 0.16 -1.2
5,087,404 + PFR28_04466 0.80 +0.8
5,087,404 + PFR28_04466 0.80 -1.0
5,087,404 + PFR28_04466 0.80 -0.0
5,087,405 - PFR28_04466 0.80 -0.3
5,087,405 - PFR28_04466 0.80 -0.0
5,087,405 - PFR28_04466 0.80 +0.4
5,087,759 + -0.7

Or see this region's nucleotide sequence