Experiment: Choline chloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00773 and PFR28_00774 are separated by 139 nucleotides PFR28_00774 and PFR28_00775 are separated by 204 nucleotides PFR28_00775 and PFR28_00776 are separated by 153 nucleotides
PFR28_00773: PFR28_00773 - HTH-type transcriptional regulator GltR, at 828,423 to 829,316
_00773
PFR28_00774: PFR28_00774 - hypothetical protein, at 829,456 to 829,584
_00774
PFR28_00775: PFR28_00775 - Osmoregulated proline transporter OpuE, at 829,789 to 831,177
_00775
PFR28_00776: PFR28_00776 - hypothetical protein, at 831,331 to 832,884
_00776
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 828.961 kb on + strand, within PFR28_00773 at 828.961 kb on + strand, within PFR28_00773 at 828.961 kb on + strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 829.075 kb on - strand, within PFR28_00773 at 829.075 kb on - strand, within PFR28_00773 at 829.319 kb on + strand at 829.319 kb on + strand at 829.320 kb on - strand at 829.363 kb on + strand at 829.363 kb on + strand at 829.364 kb on - strand at 829.364 kb on - strand at 829.364 kb on - strand at 829.382 kb on - strand at 829.382 kb on - strand at 829.394 kb on + strand at 829.394 kb on + strand at 829.394 kb on + strand at 829.395 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.583 kb on - strand at 829.586 kb on + strand at 829.586 kb on + strand at 829.586 kb on + strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.808 kb on - strand at 829.808 kb on - strand at 829.871 kb on + strand at 829.871 kb on + strand at 829.871 kb on + strand at 829.872 kb on - strand at 829.872 kb on - strand at 829.872 kb on - strand at 829.872 kb on - strand at 829.874 kb on + strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.884 kb on + strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.982 kb on + strand, within PFR28_00775 at 829.983 kb on - strand, within PFR28_00775 at 829.983 kb on - strand, within PFR28_00775 at 830.030 kb on + strand, within PFR28_00775 at 830.030 kb on + strand, within PFR28_00775 at 830.376 kb on - strand, within PFR28_00775 at 830.387 kb on + strand, within PFR28_00775 at 830.388 kb on - strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.540 kb on + strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.552 kb on - strand, within PFR28_00775 at 830.690 kb on + strand, within PFR28_00775 at 830.690 kb on + strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.805 kb on - strand, within PFR28_00775 at 830.805 kb on - strand, within PFR28_00775 at 830.805 kb on - strand, within PFR28_00775 at 830.849 kb on + strand, within PFR28_00775 at 830.849 kb on + strand, within PFR28_00775 at 830.849 kb on + strand, within PFR28_00775 at 830.850 kb on - strand, within PFR28_00775 at 830.850 kb on - strand, within PFR28_00775 at 830.879 kb on + strand, within PFR28_00775 at 830.879 kb on + strand, within PFR28_00775 at 830.879 kb on + strand, within PFR28_00775 at 830.880 kb on - strand, within PFR28_00775 at 830.981 kb on + strand, within PFR28_00775 at 830.981 kb on + strand, within PFR28_00775 at 830.981 kb on + strand, within PFR28_00775 at 831.047 kb on + strand at 831.047 kb on + strand at 831.048 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.163 kb on + strand at 831.163 kb on + strand at 831.164 kb on - strand at 831.198 kb on - strand at 831.206 kb on + strand at 831.207 kb on - strand at 831.319 kb on + strand at 831.330 kb on - strand at 831.330 kb on - strand at 831.330 kb on - strand at 831.364 kb on + strand at 831.446 kb on + strand at 831.446 kb on + strand at 831.446 kb on + strand at 831.446 kb on + strand at 831.447 kb on - strand at 831.447 kb on - strand at 831.488 kb on + strand, within PFR28_00776 at 831.489 kb on - strand, within PFR28_00776 at 831.534 kb on + strand, within PFR28_00776 at 831.710 kb on + strand, within PFR28_00776 at 831.710 kb on + strand, within PFR28_00776 at 831.711 kb on - strand, within PFR28_00776 at 831.711 kb on - strand, within PFR28_00776 at 831.711 kb on - strand, within PFR28_00776 at 831.929 kb on + strand, within PFR28_00776 at 831.929 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.047 kb on - strand, within PFR28_00776 at 832.047 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.173 kb on - strand, within PFR28_00776
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride (C) remove 828,961 + PFR28_00773 0.60 +2.0 828,961 + PFR28_00773 0.60 +0.5 828,961 + PFR28_00773 0.60 +0.6 828,962 - PFR28_00773 0.60 +0.5 828,962 - PFR28_00773 0.60 +0.2 828,962 - PFR28_00773 0.60 -0.3 828,962 - PFR28_00773 0.60 +0.0 828,962 - PFR28_00773 0.60 +0.9 828,962 - PFR28_00773 0.60 -0.1 828,962 - PFR28_00773 0.60 +0.5 829,075 - PFR28_00773 0.73 +0.2 829,075 - PFR28_00773 0.73 -1.5 829,319 + +0.7 829,319 + -1.3 829,320 - +0.5 829,363 + -1.5 829,363 + -0.1 829,364 - +0.3 829,364 - +0.5 829,364 - +0.3 829,382 - +0.1 829,382 - +0.4 829,394 + +0.1 829,394 + -0.3 829,394 + -1.5 829,395 - -0.3 829,398 - -0.4 829,398 - +0.1 829,398 - -0.4 829,398 - -1.4 829,398 - +1.2 829,398 - +0.3 829,398 - +0.5 829,583 - +0.5 829,586 + +0.2 829,586 + -1.0 829,586 + +1.1 829,587 - +0.6 829,587 - -0.1 829,587 - -0.8 829,587 - +0.7 829,587 - -1.5 829,587 - -1.0 829,730 - -1.1 829,730 - -1.0 829,730 - -0.1 829,730 - -0.8 829,730 - -0.3 829,730 - -0.4 829,808 - +0.4 829,808 - -0.1 829,871 + -0.6 829,871 + +1.0 829,871 + -1.5 829,872 - +1.0 829,872 - +1.5 829,872 - +0.6 829,872 - -1.6 829,874 + +0.5 829,875 - +0.3 829,875 - +0.5 829,875 - -0.7 829,875 - -0.5 829,875 - +0.2 829,884 + +0.1 829,885 - -0.9 829,885 - +0.5 829,982 + PFR28_00775 0.14 +1.7 829,983 - PFR28_00775 0.14 -0.9 829,983 - PFR28_00775 0.14 +1.9 830,030 + PFR28_00775 0.17 -0.6 830,030 + PFR28_00775 0.17 +0.2 830,376 - PFR28_00775 0.42 -1.2 830,387 + PFR28_00775 0.43 -0.0 830,388 - PFR28_00775 0.43 +0.1 830,486 + PFR28_00775 0.50 +0.9 830,486 + PFR28_00775 0.50 +0.6 830,486 + PFR28_00775 0.50 +1.3 830,486 + PFR28_00775 0.50 -0.5 830,487 - PFR28_00775 0.50 -1.5 830,487 - PFR28_00775 0.50 -0.1 830,487 - PFR28_00775 0.50 -1.0 830,487 - PFR28_00775 0.50 +0.1 830,487 - PFR28_00775 0.50 +0.8 830,487 - PFR28_00775 0.50 -0.7 830,487 - PFR28_00775 0.50 +1.0 830,498 + PFR28_00775 0.51 +0.2 830,498 + PFR28_00775 0.51 +0.2 830,498 + PFR28_00775 0.51 -0.8 830,498 + PFR28_00775 0.51 +0.6 830,499 - PFR28_00775 0.51 -0.3 830,499 - PFR28_00775 0.51 -1.1 830,499 - PFR28_00775 0.51 +0.3 830,499 - PFR28_00775 0.51 -0.3 830,499 - PFR28_00775 0.51 -0.6 830,499 - PFR28_00775 0.51 -1.1 830,499 - PFR28_00775 0.51 +0.7 830,499 - PFR28_00775 0.51 +1.5 830,499 - PFR28_00775 0.51 -0.1 830,540 + PFR28_00775 0.54 -0.2 830,541 - PFR28_00775 0.54 -1.9 830,541 - PFR28_00775 0.54 +0.1 830,541 - PFR28_00775 0.54 -0.3 830,541 - PFR28_00775 0.54 -2.4 830,541 - PFR28_00775 0.54 +0.4 830,552 - PFR28_00775 0.55 +0.5 830,690 + PFR28_00775 0.65 +1.5 830,690 + PFR28_00775 0.65 -1.1 830,691 - PFR28_00775 0.65 +0.0 830,691 - PFR28_00775 0.65 +1.2 830,691 - PFR28_00775 0.65 +0.1 830,691 - PFR28_00775 0.65 +1.0 830,691 - PFR28_00775 0.65 -0.3 830,691 - PFR28_00775 0.65 -1.9 830,691 - PFR28_00775 0.65 -0.1 830,804 + PFR28_00775 0.73 -0.5 830,804 + PFR28_00775 0.73 -1.0 830,804 + PFR28_00775 0.73 -0.7 830,804 + PFR28_00775 0.73 +0.7 830,804 + PFR28_00775 0.73 +0.8 830,805 - PFR28_00775 0.73 +0.4 830,805 - PFR28_00775 0.73 -0.6 830,805 - PFR28_00775 0.73 +0.5 830,849 + PFR28_00775 0.76 -0.0 830,849 + PFR28_00775 0.76 +0.3 830,849 + PFR28_00775 0.76 +1.0 830,850 - PFR28_00775 0.76 -0.4 830,850 - PFR28_00775 0.76 +1.5 830,879 + PFR28_00775 0.78 -0.7 830,879 + PFR28_00775 0.78 -1.1 830,879 + PFR28_00775 0.78 +0.3 830,880 - PFR28_00775 0.79 -0.9 830,981 + PFR28_00775 0.86 +0.1 830,981 + PFR28_00775 0.86 -3.8 830,981 + PFR28_00775 0.86 -0.6 831,047 + -0.4 831,047 + -0.4 831,048 - -0.2 831,147 - -1.5 831,147 - +0.5 831,147 - -0.1 831,147 - -1.4 831,147 - +0.3 831,163 + -0.4 831,163 + -1.1 831,164 - -1.9 831,198 - +0.3 831,206 + +0.2 831,207 - +0.7 831,319 + -1.1 831,330 - -0.9 831,330 - -0.0 831,330 - +2.1 831,364 + +1.2 831,446 + +1.1 831,446 + -1.6 831,446 + -2.0 831,446 + +0.1 831,447 - -1.0 831,447 - +0.6 831,488 + PFR28_00776 0.10 -1.2 831,489 - PFR28_00776 0.10 +0.5 831,534 + PFR28_00776 0.13 +0.2 831,710 + PFR28_00776 0.24 +1.5 831,710 + PFR28_00776 0.24 +0.0 831,711 - PFR28_00776 0.24 +0.4 831,711 - PFR28_00776 0.24 +0.9 831,711 - PFR28_00776 0.24 -1.0 831,929 + PFR28_00776 0.38 +0.5 831,929 + PFR28_00776 0.38 -0.7 832,028 + PFR28_00776 0.45 +1.8 832,028 + PFR28_00776 0.45 -2.6 832,028 + PFR28_00776 0.45 -0.7 832,028 + PFR28_00776 0.45 +0.0 832,028 + PFR28_00776 0.45 +0.8 832,029 - PFR28_00776 0.45 +0.9 832,029 - PFR28_00776 0.45 -1.0 832,029 - PFR28_00776 0.45 +0.8 832,029 - PFR28_00776 0.45 -0.5 832,029 - PFR28_00776 0.45 -0.2 832,029 - PFR28_00776 0.45 +2.2 832,029 - PFR28_00776 0.45 -1.1 832,046 + PFR28_00776 0.46 -0.3 832,046 + PFR28_00776 0.46 -1.6 832,046 + PFR28_00776 0.46 -0.3 832,046 + PFR28_00776 0.46 +1.1 832,047 - PFR28_00776 0.46 -0.6 832,047 - PFR28_00776 0.46 +0.0 832,159 - PFR28_00776 0.53 -1.3 832,159 - PFR28_00776 0.53 -0.4 832,159 - PFR28_00776 0.53 -0.9 832,159 - PFR28_00776 0.53 +0.3 832,159 - PFR28_00776 0.53 -2.2 832,173 - PFR28_00776 0.54 +1.1
Or see this region's nucleotide sequence