Experiment: Choline chloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00772 and PFR28_00773 are separated by 103 nucleotides PFR28_00773 and PFR28_00774 are separated by 139 nucleotides PFR28_00774 and PFR28_00775 are separated by 204 nucleotides
PFR28_00772: PFR28_00772 - hypothetical protein, at 827,147 to 828,319
_00772
PFR28_00773: PFR28_00773 - HTH-type transcriptional regulator GltR, at 828,423 to 829,316
_00773
PFR28_00774: PFR28_00774 - hypothetical protein, at 829,456 to 829,584
_00774
PFR28_00775: PFR28_00775 - Osmoregulated proline transporter OpuE, at 829,789 to 831,177
_00775
Position (kb) 828
829
830 Strain fitness (log2 ratio) -2
-1
0
1
2 at 827.503 kb on + strand, within PFR28_00772 at 827.503 kb on + strand, within PFR28_00772 at 827.670 kb on + strand, within PFR28_00772 at 827.671 kb on - strand, within PFR28_00772 at 827.671 kb on - strand, within PFR28_00772 at 827.671 kb on - strand, within PFR28_00772 at 827.682 kb on + strand, within PFR28_00772 at 827.682 kb on + strand, within PFR28_00772 at 827.682 kb on + strand, within PFR28_00772 at 827.683 kb on - strand, within PFR28_00772 at 827.683 kb on - strand, within PFR28_00772 at 827.683 kb on - strand, within PFR28_00772 at 827.691 kb on + strand, within PFR28_00772 at 827.692 kb on - strand, within PFR28_00772 at 827.692 kb on - strand, within PFR28_00772 at 827.692 kb on - strand, within PFR28_00772 at 827.820 kb on + strand, within PFR28_00772 at 827.820 kb on + strand, within PFR28_00772 at 827.820 kb on + strand, within PFR28_00772 at 828.098 kb on + strand, within PFR28_00772 at 828.098 kb on + strand, within PFR28_00772 at 828.110 kb on + strand, within PFR28_00772 at 828.160 kb on - strand, within PFR28_00772 at 828.160 kb on - strand, within PFR28_00772 at 828.168 kb on + strand, within PFR28_00772 at 828.168 kb on + strand, within PFR28_00772 at 828.169 kb on - strand, within PFR28_00772 at 828.169 kb on - strand, within PFR28_00772 at 828.169 kb on - strand, within PFR28_00772 at 828.169 kb on - strand, within PFR28_00772 at 828.169 kb on - strand, within PFR28_00772 at 828.233 kb on + strand at 828.233 kb on + strand at 828.233 kb on + strand at 828.234 kb on - strand at 828.234 kb on - strand at 828.234 kb on - strand at 828.245 kb on - strand at 828.358 kb on - strand at 828.358 kb on - strand at 828.358 kb on - strand at 828.390 kb on + strand at 828.518 kb on - strand, within PFR28_00773 at 828.704 kb on + strand, within PFR28_00773 at 828.705 kb on - strand, within PFR28_00773 at 828.705 kb on - strand, within PFR28_00773 at 828.711 kb on + strand, within PFR28_00773 at 828.711 kb on + strand, within PFR28_00773 at 828.711 kb on + strand, within PFR28_00773 at 828.711 kb on + strand, within PFR28_00773 at 828.711 kb on + strand, within PFR28_00773 at 828.711 kb on + strand, within PFR28_00773 at 828.712 kb on - strand, within PFR28_00773 at 828.712 kb on - strand, within PFR28_00773 at 828.712 kb on - strand, within PFR28_00773 at 828.712 kb on - strand, within PFR28_00773 at 828.712 kb on - strand, within PFR28_00773 at 828.729 kb on + strand, within PFR28_00773 at 828.730 kb on - strand, within PFR28_00773 at 828.753 kb on + strand, within PFR28_00773 at 828.753 kb on + strand, within PFR28_00773 at 828.754 kb on - strand, within PFR28_00773 at 828.754 kb on - strand, within PFR28_00773 at 828.754 kb on - strand, within PFR28_00773 at 828.765 kb on + strand, within PFR28_00773 at 828.765 kb on + strand, within PFR28_00773 at 828.765 kb on + strand, within PFR28_00773 at 828.766 kb on - strand, within PFR28_00773 at 828.961 kb on + strand, within PFR28_00773 at 828.961 kb on + strand, within PFR28_00773 at 828.961 kb on + strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 828.962 kb on - strand, within PFR28_00773 at 829.075 kb on - strand, within PFR28_00773 at 829.075 kb on - strand, within PFR28_00773 at 829.319 kb on + strand at 829.319 kb on + strand at 829.320 kb on - strand at 829.363 kb on + strand at 829.363 kb on + strand at 829.364 kb on - strand at 829.364 kb on - strand at 829.364 kb on - strand at 829.382 kb on - strand at 829.382 kb on - strand at 829.394 kb on + strand at 829.394 kb on + strand at 829.394 kb on + strand at 829.395 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.398 kb on - strand at 829.583 kb on - strand at 829.586 kb on + strand at 829.586 kb on + strand at 829.586 kb on + strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.587 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.730 kb on - strand at 829.808 kb on - strand at 829.808 kb on - strand at 829.871 kb on + strand at 829.871 kb on + strand at 829.871 kb on + strand at 829.872 kb on - strand at 829.872 kb on - strand at 829.872 kb on - strand at 829.872 kb on - strand at 829.874 kb on + strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.875 kb on - strand at 829.884 kb on + strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.982 kb on + strand, within PFR28_00775 at 829.983 kb on - strand, within PFR28_00775 at 829.983 kb on - strand, within PFR28_00775 at 830.030 kb on + strand, within PFR28_00775 at 830.030 kb on + strand, within PFR28_00775
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride (C) remove 827,503 + PFR28_00772 0.30 +0.3 827,503 + PFR28_00772 0.30 -1.5 827,670 + PFR28_00772 0.45 -1.7 827,671 - PFR28_00772 0.45 +0.4 827,671 - PFR28_00772 0.45 -0.9 827,671 - PFR28_00772 0.45 -0.6 827,682 + PFR28_00772 0.46 -0.3 827,682 + PFR28_00772 0.46 -0.7 827,682 + PFR28_00772 0.46 -0.1 827,683 - PFR28_00772 0.46 +0.3 827,683 - PFR28_00772 0.46 -0.4 827,683 - PFR28_00772 0.46 +0.3 827,691 + PFR28_00772 0.46 -1.0 827,692 - PFR28_00772 0.46 -1.3 827,692 - PFR28_00772 0.46 +0.3 827,692 - PFR28_00772 0.46 -0.6 827,820 + PFR28_00772 0.57 -0.4 827,820 + PFR28_00772 0.57 -2.0 827,820 + PFR28_00772 0.57 +0.6 828,098 + PFR28_00772 0.81 -2.6 828,098 + PFR28_00772 0.81 -1.0 828,110 + PFR28_00772 0.82 +0.1 828,160 - PFR28_00772 0.86 +0.4 828,160 - PFR28_00772 0.86 -1.4 828,168 + PFR28_00772 0.87 +0.7 828,168 + PFR28_00772 0.87 -1.6 828,169 - PFR28_00772 0.87 -1.0 828,169 - PFR28_00772 0.87 -0.9 828,169 - PFR28_00772 0.87 -0.7 828,169 - PFR28_00772 0.87 -1.4 828,169 - PFR28_00772 0.87 -0.1 828,233 + +0.8 828,233 + +0.9 828,233 + -0.9 828,234 - -0.4 828,234 - -1.1 828,234 - +0.9 828,245 - +0.5 828,358 - +2.5 828,358 - -0.4 828,358 - +0.5 828,390 + -0.9 828,518 - PFR28_00773 0.11 -0.2 828,704 + PFR28_00773 0.31 -0.2 828,705 - PFR28_00773 0.32 +0.6 828,705 - PFR28_00773 0.32 +0.2 828,711 + PFR28_00773 0.32 +0.6 828,711 + PFR28_00773 0.32 -0.4 828,711 + PFR28_00773 0.32 -0.7 828,711 + PFR28_00773 0.32 -0.7 828,711 + PFR28_00773 0.32 -0.0 828,711 + PFR28_00773 0.32 -1.9 828,712 - PFR28_00773 0.32 +0.4 828,712 - PFR28_00773 0.32 -0.7 828,712 - PFR28_00773 0.32 -2.5 828,712 - PFR28_00773 0.32 -1.0 828,712 - PFR28_00773 0.32 -0.1 828,729 + PFR28_00773 0.34 -2.0 828,730 - PFR28_00773 0.34 -1.4 828,753 + PFR28_00773 0.37 -0.3 828,753 + PFR28_00773 0.37 -1.2 828,754 - PFR28_00773 0.37 +0.2 828,754 - PFR28_00773 0.37 -0.9 828,754 - PFR28_00773 0.37 +0.2 828,765 + PFR28_00773 0.38 -1.1 828,765 + PFR28_00773 0.38 -1.0 828,765 + PFR28_00773 0.38 -1.8 828,766 - PFR28_00773 0.38 +1.0 828,961 + PFR28_00773 0.60 +2.0 828,961 + PFR28_00773 0.60 +0.5 828,961 + PFR28_00773 0.60 +0.6 828,962 - PFR28_00773 0.60 +0.5 828,962 - PFR28_00773 0.60 +0.2 828,962 - PFR28_00773 0.60 -0.3 828,962 - PFR28_00773 0.60 +0.0 828,962 - PFR28_00773 0.60 +0.9 828,962 - PFR28_00773 0.60 -0.1 828,962 - PFR28_00773 0.60 +0.5 829,075 - PFR28_00773 0.73 +0.2 829,075 - PFR28_00773 0.73 -1.5 829,319 + +0.7 829,319 + -1.3 829,320 - +0.5 829,363 + -1.5 829,363 + -0.1 829,364 - +0.3 829,364 - +0.5 829,364 - +0.3 829,382 - +0.1 829,382 - +0.4 829,394 + +0.1 829,394 + -0.3 829,394 + -1.5 829,395 - -0.3 829,398 - -0.4 829,398 - +0.1 829,398 - -0.4 829,398 - -1.4 829,398 - +1.2 829,398 - +0.3 829,398 - +0.5 829,583 - +0.5 829,586 + +0.2 829,586 + -1.0 829,586 + +1.1 829,587 - +0.6 829,587 - -0.1 829,587 - -0.8 829,587 - +0.7 829,587 - -1.5 829,587 - -1.0 829,730 - -1.1 829,730 - -1.0 829,730 - -0.1 829,730 - -0.8 829,730 - -0.3 829,730 - -0.4 829,808 - +0.4 829,808 - -0.1 829,871 + -0.6 829,871 + +1.0 829,871 + -1.5 829,872 - +1.0 829,872 - +1.5 829,872 - +0.6 829,872 - -1.6 829,874 + +0.5 829,875 - +0.3 829,875 - +0.5 829,875 - -0.7 829,875 - -0.5 829,875 - +0.2 829,884 + +0.1 829,885 - -0.9 829,885 - +0.5 829,982 + PFR28_00775 0.14 +1.7 829,983 - PFR28_00775 0.14 -0.9 829,983 - PFR28_00775 0.14 +1.9 830,030 + PFR28_00775 0.17 -0.6 830,030 + PFR28_00775 0.17 +0.2
Or see this region's nucleotide sequence