Strain Fitness in Pseudomonas sp. RS175 around PFR28_00772

Experiment: Choline chloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00771 and PFR28_00772 are separated by 0 nucleotidesPFR28_00772 and PFR28_00773 are separated by 103 nucleotides PFR28_00771: PFR28_00771 - putative allantoin permease, at 825,692 to 827,146 _00771 PFR28_00772: PFR28_00772 - hypothetical protein, at 827,147 to 828,319 _00772 PFR28_00773: PFR28_00773 - HTH-type transcriptional regulator GltR, at 828,423 to 829,316 _00773 Position (kb) 827 828 829Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 826.195 kb on - strand, within PFR28_00771at 826.195 kb on - strand, within PFR28_00771at 826.195 kb on - strand, within PFR28_00771at 826.195 kb on - strand, within PFR28_00771at 826.253 kb on + strand, within PFR28_00771at 826.394 kb on + strand, within PFR28_00771at 826.394 kb on + strand, within PFR28_00771at 826.395 kb on - strand, within PFR28_00771at 826.395 kb on - strand, within PFR28_00771at 826.395 kb on - strand, within PFR28_00771at 826.518 kb on + strand, within PFR28_00771at 826.518 kb on + strand, within PFR28_00771at 826.519 kb on - strand, within PFR28_00771at 826.648 kb on + strand, within PFR28_00771at 826.654 kb on + strand, within PFR28_00771at 826.802 kb on + strand, within PFR28_00771at 826.803 kb on - strand, within PFR28_00771at 826.803 kb on - strand, within PFR28_00771at 826.803 kb on - strand, within PFR28_00771at 826.862 kb on + strand, within PFR28_00771at 826.862 kb on + strand, within PFR28_00771at 826.862 kb on + strand, within PFR28_00771at 826.862 kb on + strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.863 kb on - strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.865 kb on + strand, within PFR28_00771at 826.866 kb on - strand, within PFR28_00771at 826.866 kb on - strand, within PFR28_00771at 826.866 kb on - strand, within PFR28_00771at 826.866 kb on - strand, within PFR28_00771at 826.928 kb on + strand, within PFR28_00771at 826.928 kb on + strand, within PFR28_00771at 826.931 kb on + strand, within PFR28_00771at 826.931 kb on + strand, within PFR28_00771at 826.931 kb on + strand, within PFR28_00771at 826.932 kb on - strand, within PFR28_00771at 826.932 kb on - strand, within PFR28_00771at 826.932 kb on - strand, within PFR28_00771at 826.932 kb on - strand, within PFR28_00771at 826.932 kb on - strand, within PFR28_00771at 826.934 kb on + strand, within PFR28_00771at 826.934 kb on + strand, within PFR28_00771at 826.934 kb on + strand, within PFR28_00771at 826.934 kb on + strand, within PFR28_00771at 826.934 kb on + strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 826.935 kb on - strand, within PFR28_00771at 827.076 kb on - strandat 827.076 kb on - strandat 827.076 kb on - strandat 827.076 kb on - strandat 827.076 kb on - strandat 827.503 kb on + strand, within PFR28_00772at 827.503 kb on + strand, within PFR28_00772at 827.670 kb on + strand, within PFR28_00772at 827.671 kb on - strand, within PFR28_00772at 827.671 kb on - strand, within PFR28_00772at 827.671 kb on - strand, within PFR28_00772at 827.682 kb on + strand, within PFR28_00772at 827.682 kb on + strand, within PFR28_00772at 827.682 kb on + strand, within PFR28_00772at 827.683 kb on - strand, within PFR28_00772at 827.683 kb on - strand, within PFR28_00772at 827.683 kb on - strand, within PFR28_00772at 827.691 kb on + strand, within PFR28_00772at 827.692 kb on - strand, within PFR28_00772at 827.692 kb on - strand, within PFR28_00772at 827.692 kb on - strand, within PFR28_00772at 827.820 kb on + strand, within PFR28_00772at 827.820 kb on + strand, within PFR28_00772at 827.820 kb on + strand, within PFR28_00772at 828.098 kb on + strand, within PFR28_00772at 828.098 kb on + strand, within PFR28_00772at 828.110 kb on + strand, within PFR28_00772at 828.160 kb on - strand, within PFR28_00772at 828.160 kb on - strand, within PFR28_00772at 828.168 kb on + strand, within PFR28_00772at 828.168 kb on + strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.169 kb on - strand, within PFR28_00772at 828.233 kb on + strandat 828.233 kb on + strandat 828.233 kb on + strandat 828.234 kb on - strandat 828.234 kb on - strandat 828.234 kb on - strandat 828.245 kb on - strandat 828.358 kb on - strandat 828.358 kb on - strandat 828.358 kb on - strandat 828.390 kb on + strandat 828.518 kb on - strand, within PFR28_00773at 828.704 kb on + strand, within PFR28_00773at 828.705 kb on - strand, within PFR28_00773at 828.705 kb on - strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.711 kb on + strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.712 kb on - strand, within PFR28_00773at 828.729 kb on + strand, within PFR28_00773at 828.730 kb on - strand, within PFR28_00773at 828.753 kb on + strand, within PFR28_00773at 828.753 kb on + strand, within PFR28_00773at 828.754 kb on - strand, within PFR28_00773at 828.754 kb on - strand, within PFR28_00773at 828.754 kb on - strand, within PFR28_00773at 828.765 kb on + strand, within PFR28_00773at 828.765 kb on + strand, within PFR28_00773at 828.765 kb on + strand, within PFR28_00773at 828.766 kb on - strand, within PFR28_00773at 828.961 kb on + strand, within PFR28_00773at 828.961 kb on + strand, within PFR28_00773at 828.961 kb on + strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 828.962 kb on - strand, within PFR28_00773at 829.075 kb on - strand, within PFR28_00773at 829.075 kb on - strand, within PFR28_00773at 829.319 kb on + strandat 829.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride (C)
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826,195 - PFR28_00771 0.35 +0.5
826,195 - PFR28_00771 0.35 +0.6
826,195 - PFR28_00771 0.35 +1.4
826,195 - PFR28_00771 0.35 -1.7
826,253 + PFR28_00771 0.39 -1.4
826,394 + PFR28_00771 0.48 -1.1
826,394 + PFR28_00771 0.48 -0.5
826,395 - PFR28_00771 0.48 +1.3
826,395 - PFR28_00771 0.48 -0.3
826,395 - PFR28_00771 0.48 -3.2
826,518 + PFR28_00771 0.57 +1.3
826,518 + PFR28_00771 0.57 -1.7
826,519 - PFR28_00771 0.57 +0.3
826,648 + PFR28_00771 0.66 +0.5
826,654 + PFR28_00771 0.66 -1.5
826,802 + PFR28_00771 0.76 +1.7
826,803 - PFR28_00771 0.76 -1.2
826,803 - PFR28_00771 0.76 +0.9
826,803 - PFR28_00771 0.76 -0.0
826,862 + PFR28_00771 0.80 -0.2
826,862 + PFR28_00771 0.80 +0.5
826,862 + PFR28_00771 0.80 +1.5
826,862 + PFR28_00771 0.80 +0.7
826,863 - PFR28_00771 0.80 -2.1
826,863 - PFR28_00771 0.80 +0.9
826,863 - PFR28_00771 0.80 +2.0
826,863 - PFR28_00771 0.80 +0.5
826,863 - PFR28_00771 0.80 +0.7
826,863 - PFR28_00771 0.80 +0.4
826,863 - PFR28_00771 0.80 -1.0
826,865 + PFR28_00771 0.81 -0.9
826,865 + PFR28_00771 0.81 +0.6
826,865 + PFR28_00771 0.81 -0.3
826,865 + PFR28_00771 0.81 +0.5
826,865 + PFR28_00771 0.81 -0.4
826,865 + PFR28_00771 0.81 -0.5
826,865 + PFR28_00771 0.81 +0.5
826,866 - PFR28_00771 0.81 +0.8
826,866 - PFR28_00771 0.81 -0.4
826,866 - PFR28_00771 0.81 -0.4
826,866 - PFR28_00771 0.81 +0.7
826,928 + PFR28_00771 0.85 -0.0
826,928 + PFR28_00771 0.85 -0.0
826,931 + PFR28_00771 0.85 -0.7
826,931 + PFR28_00771 0.85 -1.3
826,931 + PFR28_00771 0.85 -0.3
826,932 - PFR28_00771 0.85 -1.3
826,932 - PFR28_00771 0.85 +0.1
826,932 - PFR28_00771 0.85 +1.0
826,932 - PFR28_00771 0.85 +1.6
826,932 - PFR28_00771 0.85 +0.0
826,934 + PFR28_00771 0.85 +1.7
826,934 + PFR28_00771 0.85 -0.1
826,934 + PFR28_00771 0.85 -0.1
826,934 + PFR28_00771 0.85 +1.3
826,934 + PFR28_00771 0.85 -0.4
826,935 - PFR28_00771 0.85 +0.2
826,935 - PFR28_00771 0.85 -0.9
826,935 - PFR28_00771 0.85 -0.1
826,935 - PFR28_00771 0.85 +1.2
826,935 - PFR28_00771 0.85 -0.1
826,935 - PFR28_00771 0.85 -1.4
826,935 - PFR28_00771 0.85 +1.7
827,076 - +0.1
827,076 - -0.4
827,076 - -1.9
827,076 - -0.9
827,076 - -0.6
827,503 + PFR28_00772 0.30 +0.3
827,503 + PFR28_00772 0.30 -1.5
827,670 + PFR28_00772 0.45 -1.7
827,671 - PFR28_00772 0.45 +0.4
827,671 - PFR28_00772 0.45 -0.9
827,671 - PFR28_00772 0.45 -0.6
827,682 + PFR28_00772 0.46 -0.3
827,682 + PFR28_00772 0.46 -0.7
827,682 + PFR28_00772 0.46 -0.1
827,683 - PFR28_00772 0.46 +0.3
827,683 - PFR28_00772 0.46 -0.4
827,683 - PFR28_00772 0.46 +0.3
827,691 + PFR28_00772 0.46 -1.0
827,692 - PFR28_00772 0.46 -1.3
827,692 - PFR28_00772 0.46 +0.3
827,692 - PFR28_00772 0.46 -0.6
827,820 + PFR28_00772 0.57 -0.4
827,820 + PFR28_00772 0.57 -2.0
827,820 + PFR28_00772 0.57 +0.6
828,098 + PFR28_00772 0.81 -2.6
828,098 + PFR28_00772 0.81 -1.0
828,110 + PFR28_00772 0.82 +0.1
828,160 - PFR28_00772 0.86 +0.4
828,160 - PFR28_00772 0.86 -1.4
828,168 + PFR28_00772 0.87 +0.7
828,168 + PFR28_00772 0.87 -1.6
828,169 - PFR28_00772 0.87 -1.0
828,169 - PFR28_00772 0.87 -0.9
828,169 - PFR28_00772 0.87 -0.7
828,169 - PFR28_00772 0.87 -1.4
828,169 - PFR28_00772 0.87 -0.1
828,233 + +0.8
828,233 + +0.9
828,233 + -0.9
828,234 - -0.4
828,234 - -1.1
828,234 - +0.9
828,245 - +0.5
828,358 - +2.5
828,358 - -0.4
828,358 - +0.5
828,390 + -0.9
828,518 - PFR28_00773 0.11 -0.2
828,704 + PFR28_00773 0.31 -0.2
828,705 - PFR28_00773 0.32 +0.6
828,705 - PFR28_00773 0.32 +0.2
828,711 + PFR28_00773 0.32 +0.6
828,711 + PFR28_00773 0.32 -0.4
828,711 + PFR28_00773 0.32 -0.7
828,711 + PFR28_00773 0.32 -0.7
828,711 + PFR28_00773 0.32 -0.0
828,711 + PFR28_00773 0.32 -1.9
828,712 - PFR28_00773 0.32 +0.4
828,712 - PFR28_00773 0.32 -0.7
828,712 - PFR28_00773 0.32 -2.5
828,712 - PFR28_00773 0.32 -1.0
828,712 - PFR28_00773 0.32 -0.1
828,729 + PFR28_00773 0.34 -2.0
828,730 - PFR28_00773 0.34 -1.4
828,753 + PFR28_00773 0.37 -0.3
828,753 + PFR28_00773 0.37 -1.2
828,754 - PFR28_00773 0.37 +0.2
828,754 - PFR28_00773 0.37 -0.9
828,754 - PFR28_00773 0.37 +0.2
828,765 + PFR28_00773 0.38 -1.1
828,765 + PFR28_00773 0.38 -1.0
828,765 + PFR28_00773 0.38 -1.8
828,766 - PFR28_00773 0.38 +1.0
828,961 + PFR28_00773 0.60 +2.0
828,961 + PFR28_00773 0.60 +0.5
828,961 + PFR28_00773 0.60 +0.6
828,962 - PFR28_00773 0.60 +0.5
828,962 - PFR28_00773 0.60 +0.2
828,962 - PFR28_00773 0.60 -0.3
828,962 - PFR28_00773 0.60 +0.0
828,962 - PFR28_00773 0.60 +0.9
828,962 - PFR28_00773 0.60 -0.1
828,962 - PFR28_00773 0.60 +0.5
829,075 - PFR28_00773 0.73 +0.2
829,075 - PFR28_00773 0.73 -1.5
829,319 + +0.7
829,319 + -1.3

Or see this region's nucleotide sequence