Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02090

Experiment: CPL00262

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrtcB and yafP are separated by 245 nucleotidesyafP and dinB overlap by 4 nucleotides NOLOHH_02085: rtcB - RNA ligase RtcB family protein, at 324,758 to 325,897 rtcB NOLOHH_02090: yafP - GNAT family N-acetyltransferase, at 326,143 to 326,595 yafP NOLOHH_02095: dinB - DNA polymerase IV, at 326,592 to 327,647 dinB Position (kb) 326 327Strain fitness (log2 ratio) -2 -1 0 1 2at 325.180 kb on + strand, within rtcBat 325.181 kb on - strand, within rtcBat 325.181 kb on - strand, within rtcBat 325.216 kb on + strand, within rtcBat 325.229 kb on + strand, within rtcBat 325.229 kb on + strand, within rtcBat 325.229 kb on + strand, within rtcBat 325.255 kb on + strand, within rtcBat 325.258 kb on + strand, within rtcBat 325.258 kb on + strand, within rtcBat 325.259 kb on - strand, within rtcBat 325.294 kb on + strand, within rtcBat 325.294 kb on + strand, within rtcBat 325.295 kb on - strand, within rtcBat 325.295 kb on - strand, within rtcBat 325.295 kb on - strand, within rtcBat 325.295 kb on - strand, within rtcBat 325.296 kb on + strand, within rtcBat 325.296 kb on + strand, within rtcBat 325.296 kb on + strand, within rtcBat 325.296 kb on + strand, within rtcBat 325.297 kb on - strand, within rtcBat 325.297 kb on - strand, within rtcBat 325.297 kb on - strand, within rtcBat 325.297 kb on - strand, within rtcBat 325.352 kb on - strand, within rtcBat 325.366 kb on + strand, within rtcBat 325.366 kb on + strand, within rtcBat 325.627 kb on - strand, within rtcBat 325.643 kb on - strand, within rtcBat 325.772 kb on + strand, within rtcBat 325.790 kb on + strandat 325.808 kb on + strandat 325.858 kb on + strandat 325.859 kb on - strandat 325.898 kb on - strandat 325.900 kb on - strandat 325.900 kb on - strandat 325.914 kb on - strandat 325.965 kb on - strandat 326.109 kb on - strandat 326.109 kb on - strandat 326.112 kb on - strandat 326.145 kb on - strandat 326.293 kb on - strand, within yafPat 326.337 kb on - strand, within yafPat 326.354 kb on - strand, within yafPat 326.383 kb on - strand, within yafPat 326.498 kb on + strand, within yafPat 326.545 kb on + strand, within yafPat 326.546 kb on - strand, within yafPat 326.578 kb on + strandat 326.578 kb on + strandat 326.585 kb on - strandat 326.590 kb on - strandat 326.697 kb on - strandat 326.724 kb on - strand, within dinBat 326.779 kb on - strand, within dinBat 327.011 kb on + strand, within dinBat 327.039 kb on + strand, within dinBat 327.039 kb on + strand, within dinBat 327.039 kb on + strand, within dinBat 327.058 kb on - strand, within dinBat 327.129 kb on + strand, within dinBat 327.156 kb on - strand, within dinBat 327.180 kb on - strand, within dinBat 327.331 kb on + strand, within dinBat 327.370 kb on + strand, within dinBat 327.393 kb on - strand, within dinBat 327.480 kb on - strand, within dinBat 327.485 kb on + strand, within dinBat 327.486 kb on - strand, within dinBat 327.486 kb on - strand, within dinBat 327.486 kb on - strand, within dinBat 327.489 kb on + strand, within dinBat 327.489 kb on + strand, within dinBat 327.489 kb on + strand, within dinBat 327.489 kb on + strand, within dinBat 327.489 kb on + strand, within dinBat 327.501 kb on - strand, within dinBat 327.557 kb on + strandat 327.557 kb on + strandat 327.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPL00262
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325,180 + rtcB NOLOHH_02085 0.37 +0.5
325,181 - rtcB NOLOHH_02085 0.37 +0.6
325,181 - rtcB NOLOHH_02085 0.37 +0.6
325,216 + rtcB NOLOHH_02085 0.40 -0.1
325,229 + rtcB NOLOHH_02085 0.41 -1.1
325,229 + rtcB NOLOHH_02085 0.41 -0.1
325,229 + rtcB NOLOHH_02085 0.41 -0.0
325,255 + rtcB NOLOHH_02085 0.44 -1.0
325,258 + rtcB NOLOHH_02085 0.44 -0.0
325,258 + rtcB NOLOHH_02085 0.44 -1.0
325,259 - rtcB NOLOHH_02085 0.44 +0.9
325,294 + rtcB NOLOHH_02085 0.47 -1.2
325,294 + rtcB NOLOHH_02085 0.47 +1.0
325,295 - rtcB NOLOHH_02085 0.47 -0.8
325,295 - rtcB NOLOHH_02085 0.47 -1.2
325,295 - rtcB NOLOHH_02085 0.47 +1.4
325,295 - rtcB NOLOHH_02085 0.47 +0.6
325,296 + rtcB NOLOHH_02085 0.47 +0.4
325,296 + rtcB NOLOHH_02085 0.47 -0.3
325,296 + rtcB NOLOHH_02085 0.47 +0.5
325,296 + rtcB NOLOHH_02085 0.47 +0.9
325,297 - rtcB NOLOHH_02085 0.47 +0.4
325,297 - rtcB NOLOHH_02085 0.47 -1.6
325,297 - rtcB NOLOHH_02085 0.47 +0.1
325,297 - rtcB NOLOHH_02085 0.47 -0.4
325,352 - rtcB NOLOHH_02085 0.52 +1.9
325,366 + rtcB NOLOHH_02085 0.53 -0.4
325,366 + rtcB NOLOHH_02085 0.53 +0.4
325,627 - rtcB NOLOHH_02085 0.76 +0.8
325,643 - rtcB NOLOHH_02085 0.78 -1.1
325,772 + rtcB NOLOHH_02085 0.89 +0.9
325,790 + +0.8
325,808 + +0.6
325,858 + -0.3
325,859 - -0.6
325,898 - -0.1
325,900 - -0.1
325,900 - -1.8
325,914 - -0.1
325,965 - +0.6
326,109 - +0.4
326,109 - +0.5
326,112 - -0.5
326,145 - +1.5
326,293 - yafP NOLOHH_02090 0.33 -0.9
326,337 - yafP NOLOHH_02090 0.43 +1.0
326,354 - yafP NOLOHH_02090 0.47 +1.2
326,383 - yafP NOLOHH_02090 0.53 -0.4
326,498 + yafP NOLOHH_02090 0.78 -0.2
326,545 + yafP NOLOHH_02090 0.89 +0.3
326,546 - yafP NOLOHH_02090 0.89 +1.6
326,578 + -0.8
326,578 + +0.0
326,585 - +0.5
326,590 - -0.1
326,697 - -1.2
326,724 - dinB NOLOHH_02095 0.12 -1.6
326,779 - dinB NOLOHH_02095 0.18 -1.0
327,011 + dinB NOLOHH_02095 0.40 -1.1
327,039 + dinB NOLOHH_02095 0.42 -0.8
327,039 + dinB NOLOHH_02095 0.42 -0.8
327,039 + dinB NOLOHH_02095 0.42 +1.2
327,058 - dinB NOLOHH_02095 0.44 -0.1
327,129 + dinB NOLOHH_02095 0.51 -0.2
327,156 - dinB NOLOHH_02095 0.53 -0.2
327,180 - dinB NOLOHH_02095 0.56 -0.2
327,331 + dinB NOLOHH_02095 0.70 -1.1
327,370 + dinB NOLOHH_02095 0.74 +0.6
327,393 - dinB NOLOHH_02095 0.76 -0.8
327,480 - dinB NOLOHH_02095 0.84 -0.1
327,485 + dinB NOLOHH_02095 0.85 +2.6
327,486 - dinB NOLOHH_02095 0.85 +0.6
327,486 - dinB NOLOHH_02095 0.85 +0.6
327,486 - dinB NOLOHH_02095 0.85 +0.6
327,489 + dinB NOLOHH_02095 0.85 +0.4
327,489 + dinB NOLOHH_02095 0.85 +0.3
327,489 + dinB NOLOHH_02095 0.85 -1.4
327,489 + dinB NOLOHH_02095 0.85 -0.5
327,489 + dinB NOLOHH_02095 0.85 -0.4
327,501 - dinB NOLOHH_02095 0.86 -0.3
327,557 + -0.8
327,557 + -0.2
327,558 - +2.2

Or see this region's nucleotide sequence