Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26650

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26635 and ABID97_RS26640 are separated by 16 nucleotidesABID97_RS26640 and ABID97_RS26645 are separated by 175 nucleotidesABID97_RS26645 and ABID97_RS26650 are separated by 7 nucleotidesABID97_RS26650 and ABID97_RS26655 are separated by 105 nucleotidesABID97_RS26655 and ABID97_RS26660 are separated by 24 nucleotidesABID97_RS26660 and ABID97_RS26665 are separated by 162 nucleotides ABID97_RS26635: ABID97_RS26635 - LysR family transcriptional regulator, at 252,358 to 253,275 _RS26635 ABID97_RS26640: ABID97_RS26640 - hypothetical protein, at 253,292 to 253,549 _RS26640 ABID97_RS26645: ABID97_RS26645 - hypothetical protein, at 253,725 to 254,081 _RS26645 ABID97_RS26650: ABID97_RS26650 - zeta toxin family protein, at 254,089 to 254,682 _RS26650 ABID97_RS26655: ABID97_RS26655 - hypothetical protein, at 254,788 to 255,072 _RS26655 ABID97_RS26660: ABID97_RS26660 - hypothetical protein, at 255,097 to 255,471 _RS26660 ABID97_RS26665: ABID97_RS26665 - DUF1801 domain-containing protein, at 255,634 to 256,011 _RS26665 Position (kb) 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 253.192 kb on + strandat 253.192 kb on + strandat 253.192 kb on + strandat 253.193 kb on - strandat 253.464 kb on + strand, within ABID97_RS26640at 253.465 kb on - strand, within ABID97_RS26640at 253.465 kb on - strand, within ABID97_RS26640at 253.465 kb on - strand, within ABID97_RS26640at 253.539 kb on + strandat 253.539 kb on + strandat 253.724 kb on + strandat 253.826 kb on - strand, within ABID97_RS26645at 254.162 kb on + strand, within ABID97_RS26650at 254.162 kb on + strand, within ABID97_RS26650at 254.163 kb on - strand, within ABID97_RS26650at 254.163 kb on - strand, within ABID97_RS26650at 254.389 kb on + strand, within ABID97_RS26650at 254.656 kb on + strandat 255.026 kb on + strand, within ABID97_RS26655at 255.027 kb on - strand, within ABID97_RS26655at 255.027 kb on - strand, within ABID97_RS26655at 255.027 kb on - strand, within ABID97_RS26655at 255.125 kb on + strandat 255.126 kb on - strandat 255.206 kb on + strandat 255.207 kb on - strand, within ABID97_RS26660at 255.207 kb on - strand, within ABID97_RS26660at 255.230 kb on + strand, within ABID97_RS26660at 255.249 kb on - strand, within ABID97_RS26660at 255.272 kb on + strand, within ABID97_RS26660at 255.272 kb on + strand, within ABID97_RS26660at 255.272 kb on + strand, within ABID97_RS26660at 255.276 kb on - strand, within ABID97_RS26660at 255.315 kb on - strand, within ABID97_RS26660at 255.315 kb on - strand, within ABID97_RS26660at 255.315 kb on - strand, within ABID97_RS26660at 255.318 kb on - strand, within ABID97_RS26660at 255.507 kb on + strandat 255.507 kb on + strandat 255.670 kb on + strandat 255.670 kb on + strandat 255.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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253,192 + +0.1
253,192 + -1.0
253,192 + +0.2
253,193 - -0.7
253,464 + ABID97_RS26640 0.67 -0.7
253,465 - ABID97_RS26640 0.67 -0.4
253,465 - ABID97_RS26640 0.67 +1.1
253,465 - ABID97_RS26640 0.67 -2.0
253,539 + -1.2
253,539 + +1.7
253,724 + +2.7
253,826 - ABID97_RS26645 0.28 +0.4
254,162 + ABID97_RS26650 0.12 -0.0
254,162 + ABID97_RS26650 0.12 +0.3
254,163 - ABID97_RS26650 0.12 -0.1
254,163 - ABID97_RS26650 0.12 -0.1
254,389 + ABID97_RS26650 0.51 +1.0
254,656 + -0.6
255,026 + ABID97_RS26655 0.84 +0.6
255,027 - ABID97_RS26655 0.84 -0.4
255,027 - ABID97_RS26655 0.84 -0.1
255,027 - ABID97_RS26655 0.84 -0.5
255,125 + +0.3
255,126 - +0.8
255,206 + +0.4
255,207 - ABID97_RS26660 0.29 -0.5
255,207 - ABID97_RS26660 0.29 -0.7
255,230 + ABID97_RS26660 0.35 -0.7
255,249 - ABID97_RS26660 0.41 -0.8
255,272 + ABID97_RS26660 0.47 -0.8
255,272 + ABID97_RS26660 0.47 -0.0
255,272 + ABID97_RS26660 0.47 +0.5
255,276 - ABID97_RS26660 0.48 -0.7
255,315 - ABID97_RS26660 0.58 +0.3
255,315 - ABID97_RS26660 0.58 +0.4
255,315 - ABID97_RS26660 0.58 -0.3
255,318 - ABID97_RS26660 0.59 +0.1
255,507 + -0.4
255,507 + -1.1
255,670 + +0.3
255,670 + +1.7
255,671 - -0.2

Or see this region's nucleotide sequence