Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11435

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11430 and ABID97_RS11435 are separated by 85 nucleotidesABID97_RS11435 and ABID97_RS11440 are separated by 371 nucleotides ABID97_RS11430: ABID97_RS11430 - aldehyde dehydrogenase family protein, at 2,358,471 to 2,359,910 _RS11430 ABID97_RS11435: ABID97_RS11435 - LysR family transcriptional regulator, at 2,359,996 to 2,360,916 _RS11435 ABID97_RS11440: ABID97_RS11440 - AraC family transcriptional regulator, at 2,361,288 to 2,362,271 _RS11440 Position (kb) 2359 2360 2361Strain fitness (log2 ratio) -1 0 1at 2359.848 kb on + strandat 2359.887 kb on + strandat 2359.887 kb on + strandat 2359.888 kb on - strandat 2360.189 kb on - strand, within ABID97_RS11435at 2360.768 kb on + strand, within ABID97_RS11435at 2361.065 kb on + strandat 2361.295 kb on + strandat 2361.296 kb on - strandat 2361.471 kb on + strand, within ABID97_RS11440at 2361.899 kb on + strand, within ABID97_RS11440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
2,359,848 + -0.6
2,359,887 + -0.1
2,359,887 + +0.1
2,359,888 - +0.0
2,360,189 - ABID97_RS11435 0.21 -0.2
2,360,768 + ABID97_RS11435 0.84 +0.9
2,361,065 + +0.4
2,361,295 + -0.8
2,361,296 - +1.0
2,361,471 + ABID97_RS11440 0.19 +0.3
2,361,899 + ABID97_RS11440 0.62 -0.2

Or see this region's nucleotide sequence