Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06870

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06865 and ABID97_RS06870 are separated by 41 nucleotidesABID97_RS06870 and ABID97_RS06875 are separated by 6 nucleotidesABID97_RS06875 and ABID97_RS06880 are separated by 27 nucleotides ABID97_RS06865: ABID97_RS06865 - galactofuranose ABC transporter, permease protein YjfF, at 1,449,740 to 1,450,768 _RS06865 ABID97_RS06870: ABID97_RS06870 - IlvD/Edd family dehydratase, at 1,450,810 to 1,452,561 _RS06870 ABID97_RS06875: ABID97_RS06875 - dihydrodipicolinate synthase family protein, at 1,452,568 to 1,453,485 _RS06875 ABID97_RS06880: ABID97_RS06880 - hypothetical protein, at 1,453,513 to 1,453,767 _RS06880 Position (kb) 1450 1451 1452 1453Strain fitness (log2 ratio) -1 0 1 2 3at 1449.824 kb on + strandat 1450.092 kb on + strand, within ABID97_RS06865at 1450.206 kb on - strand, within ABID97_RS06865at 1450.379 kb on + strand, within ABID97_RS06865at 1450.502 kb on + strand, within ABID97_RS06865at 1450.503 kb on - strand, within ABID97_RS06865at 1450.503 kb on - strand, within ABID97_RS06865at 1450.503 kb on - strand, within ABID97_RS06865at 1450.503 kb on - strand, within ABID97_RS06865at 1450.601 kb on + strand, within ABID97_RS06865at 1450.886 kb on - strandat 1451.777 kb on - strand, within ABID97_RS06870at 1452.070 kb on + strand, within ABID97_RS06870at 1452.071 kb on - strand, within ABID97_RS06870at 1452.071 kb on - strand, within ABID97_RS06870at 1452.071 kb on - strand, within ABID97_RS06870at 1452.071 kb on - strand, within ABID97_RS06870at 1452.071 kb on - strand, within ABID97_RS06870at 1452.469 kb on + strandat 1452.580 kb on + strandat 1452.581 kb on - strandat 1452.815 kb on - strand, within ABID97_RS06875at 1452.941 kb on - strand, within ABID97_RS06875at 1453.285 kb on + strand, within ABID97_RS06875at 1453.286 kb on - strand, within ABID97_RS06875at 1453.312 kb on + strand, within ABID97_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,449,824 + -0.1
1,450,092 + ABID97_RS06865 0.34 +0.5
1,450,206 - ABID97_RS06865 0.45 +0.8
1,450,379 + ABID97_RS06865 0.62 -0.0
1,450,502 + ABID97_RS06865 0.74 +0.1
1,450,503 - ABID97_RS06865 0.74 -0.5
1,450,503 - ABID97_RS06865 0.74 -0.1
1,450,503 - ABID97_RS06865 0.74 -0.5
1,450,503 - ABID97_RS06865 0.74 -0.3
1,450,601 + ABID97_RS06865 0.84 -0.9
1,450,886 - -1.0
1,451,777 - ABID97_RS06870 0.55 +0.1
1,452,070 + ABID97_RS06870 0.72 +1.0
1,452,071 - ABID97_RS06870 0.72 +1.9
1,452,071 - ABID97_RS06870 0.72 +0.6
1,452,071 - ABID97_RS06870 0.72 -0.8
1,452,071 - ABID97_RS06870 0.72 -0.5
1,452,071 - ABID97_RS06870 0.72 +0.4
1,452,469 + +0.6
1,452,580 + -0.0
1,452,581 - +0.1
1,452,815 - ABID97_RS06875 0.27 +1.1
1,452,941 - ABID97_RS06875 0.41 +0.2
1,453,285 + ABID97_RS06875 0.78 +0.3
1,453,286 - ABID97_RS06875 0.78 +2.8
1,453,312 + ABID97_RS06875 0.81 -0.1

Or see this region's nucleotide sequence