Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01970

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01960 and ABID97_RS01965 are separated by 105 nucleotidesABID97_RS01965 and ABID97_RS01970 are separated by 44 nucleotidesABID97_RS01970 and ABID97_RS01975 are separated by 87 nucleotides ABID97_RS01960: ABID97_RS01960 - alpha-ketoglutarate dehydrogenase, at 387,787 to 390,455 _RS01960 ABID97_RS01965: ABID97_RS01965 - Lrp/AsnC family transcriptional regulator, at 390,561 to 391,025 _RS01965 ABID97_RS01970: ABID97_RS01970 - PhoX family phosphatase, at 391,070 to 393,340 _RS01970 ABID97_RS01975: ABID97_RS01975 - MltA domain-containing protein, at 393,428 to 394,576 _RS01975 Position (kb) 391 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 390.086 kb on - strand, within ABID97_RS01960at 390.086 kb on - strand, within ABID97_RS01960at 390.239 kb on - strandat 390.486 kb on + strandat 390.487 kb on - strandat 390.487 kb on - strandat 390.589 kb on + strandat 390.715 kb on - strand, within ABID97_RS01965at 390.852 kb on + strand, within ABID97_RS01965at 390.876 kb on + strand, within ABID97_RS01965at 390.876 kb on + strand, within ABID97_RS01965at 390.876 kb on + strand, within ABID97_RS01965at 390.996 kb on + strandat 390.996 kb on + strandat 390.997 kb on - strandat 390.997 kb on - strandat 390.997 kb on - strandat 390.997 kb on - strandat 391.443 kb on + strand, within ABID97_RS01970at 391.444 kb on - strand, within ABID97_RS01970at 391.585 kb on + strand, within ABID97_RS01970at 391.587 kb on + strand, within ABID97_RS01970at 391.587 kb on + strand, within ABID97_RS01970at 391.587 kb on + strand, within ABID97_RS01970at 391.587 kb on + strand, within ABID97_RS01970at 391.588 kb on - strand, within ABID97_RS01970at 391.588 kb on - strand, within ABID97_RS01970at 391.704 kb on + strand, within ABID97_RS01970at 391.704 kb on + strand, within ABID97_RS01970at 391.704 kb on + strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.705 kb on - strand, within ABID97_RS01970at 391.776 kb on + strand, within ABID97_RS01970at 391.896 kb on + strand, within ABID97_RS01970at 391.896 kb on + strand, within ABID97_RS01970at 391.896 kb on + strand, within ABID97_RS01970at 391.896 kb on + strand, within ABID97_RS01970at 391.897 kb on - strand, within ABID97_RS01970at 391.897 kb on - strand, within ABID97_RS01970at 392.004 kb on + strand, within ABID97_RS01970at 392.004 kb on + strand, within ABID97_RS01970at 392.004 kb on + strand, within ABID97_RS01970at 392.004 kb on + strand, within ABID97_RS01970at 392.004 kb on + strand, within ABID97_RS01970at 392.005 kb on - strand, within ABID97_RS01970at 392.005 kb on - strand, within ABID97_RS01970at 392.005 kb on - strand, within ABID97_RS01970at 392.005 kb on - strand, within ABID97_RS01970at 392.073 kb on + strand, within ABID97_RS01970at 392.074 kb on - strand, within ABID97_RS01970at 392.074 kb on - strand, within ABID97_RS01970at 392.074 kb on - strand, within ABID97_RS01970at 392.079 kb on + strand, within ABID97_RS01970at 392.079 kb on + strand, within ABID97_RS01970at 392.080 kb on - strand, within ABID97_RS01970at 392.106 kb on + strand, within ABID97_RS01970at 392.107 kb on - strand, within ABID97_RS01970at 392.107 kb on - strand, within ABID97_RS01970at 392.235 kb on + strand, within ABID97_RS01970at 392.235 kb on + strand, within ABID97_RS01970at 392.236 kb on - strand, within ABID97_RS01970at 392.469 kb on + strand, within ABID97_RS01970at 392.469 kb on + strand, within ABID97_RS01970at 392.469 kb on + strand, within ABID97_RS01970at 392.469 kb on + strand, within ABID97_RS01970at 392.469 kb on + strand, within ABID97_RS01970at 392.469 kb on + strand, within ABID97_RS01970at 392.470 kb on - strand, within ABID97_RS01970at 392.470 kb on - strand, within ABID97_RS01970at 392.556 kb on + strand, within ABID97_RS01970at 392.637 kb on + strand, within ABID97_RS01970at 392.638 kb on - strand, within ABID97_RS01970at 392.638 kb on - strand, within ABID97_RS01970at 392.638 kb on - strand, within ABID97_RS01970at 392.638 kb on - strand, within ABID97_RS01970at 392.638 kb on - strand, within ABID97_RS01970at 392.638 kb on - strand, within ABID97_RS01970at 392.691 kb on + strand, within ABID97_RS01970at 392.691 kb on + strand, within ABID97_RS01970at 392.692 kb on - strand, within ABID97_RS01970at 392.904 kb on + strand, within ABID97_RS01970at 392.904 kb on + strand, within ABID97_RS01970at 392.905 kb on - strand, within ABID97_RS01970at 392.937 kb on + strand, within ABID97_RS01970at 392.938 kb on - strand, within ABID97_RS01970at 393.383 kb on + strandat 393.756 kb on + strand, within ABID97_RS01975at 393.757 kb on - strand, within ABID97_RS01975at 393.885 kb on + strand, within ABID97_RS01975at 394.077 kb on + strand, within ABID97_RS01975at 394.078 kb on - strand, within ABID97_RS01975at 394.078 kb on - strand, within ABID97_RS01975at 394.116 kb on + strand, within ABID97_RS01975at 394.116 kb on + strand, within ABID97_RS01975at 394.116 kb on + strand, within ABID97_RS01975at 394.117 kb on - strand, within ABID97_RS01975at 394.117 kb on - strand, within ABID97_RS01975at 394.117 kb on - strand, within ABID97_RS01975at 394.161 kb on + strand, within ABID97_RS01975at 394.161 kb on + strand, within ABID97_RS01975at 394.162 kb on - strand, within ABID97_RS01975at 394.173 kb on + strand, within ABID97_RS01975at 394.173 kb on + strand, within ABID97_RS01975at 394.174 kb on - strand, within ABID97_RS01975at 394.176 kb on + strand, within ABID97_RS01975at 394.177 kb on - strand, within ABID97_RS01975at 394.177 kb on - strand, within ABID97_RS01975at 394.177 kb on - strand, within ABID97_RS01975at 394.177 kb on - strand, within ABID97_RS01975

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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390,086 - ABID97_RS01960 0.86 -0.4
390,086 - ABID97_RS01960 0.86 +2.9
390,239 - -0.4
390,486 + +0.6
390,487 - -0.6
390,487 - -0.3
390,589 + -0.1
390,715 - ABID97_RS01965 0.33 -0.1
390,852 + ABID97_RS01965 0.63 -0.8
390,876 + ABID97_RS01965 0.68 -0.4
390,876 + ABID97_RS01965 0.68 -0.7
390,876 + ABID97_RS01965 0.68 +0.1
390,996 + -1.1
390,996 + -1.2
390,997 - +0.1
390,997 - -0.3
390,997 - -0.4
390,997 - -0.7
391,443 + ABID97_RS01970 0.16 -0.5
391,444 - ABID97_RS01970 0.16 -0.1
391,585 + ABID97_RS01970 0.23 +0.5
391,587 + ABID97_RS01970 0.23 +1.0
391,587 + ABID97_RS01970 0.23 +0.2
391,587 + ABID97_RS01970 0.23 +2.5
391,587 + ABID97_RS01970 0.23 +0.4
391,588 - ABID97_RS01970 0.23 -0.5
391,588 - ABID97_RS01970 0.23 -0.1
391,704 + ABID97_RS01970 0.28 -0.0
391,704 + ABID97_RS01970 0.28 -1.6
391,704 + ABID97_RS01970 0.28 -0.2
391,705 - ABID97_RS01970 0.28 -0.2
391,705 - ABID97_RS01970 0.28 -0.1
391,705 - ABID97_RS01970 0.28 -0.0
391,705 - ABID97_RS01970 0.28 -0.6
391,705 - ABID97_RS01970 0.28 +0.3
391,705 - ABID97_RS01970 0.28 +0.3
391,705 - ABID97_RS01970 0.28 +0.2
391,776 + ABID97_RS01970 0.31 +0.1
391,896 + ABID97_RS01970 0.36 +0.1
391,896 + ABID97_RS01970 0.36 -0.2
391,896 + ABID97_RS01970 0.36 +0.9
391,896 + ABID97_RS01970 0.36 -1.0
391,897 - ABID97_RS01970 0.36 -0.1
391,897 - ABID97_RS01970 0.36 -0.1
392,004 + ABID97_RS01970 0.41 -0.0
392,004 + ABID97_RS01970 0.41 +1.8
392,004 + ABID97_RS01970 0.41 +1.9
392,004 + ABID97_RS01970 0.41 +0.1
392,004 + ABID97_RS01970 0.41 +1.2
392,005 - ABID97_RS01970 0.41 +0.5
392,005 - ABID97_RS01970 0.41 +0.6
392,005 - ABID97_RS01970 0.41 -0.2
392,005 - ABID97_RS01970 0.41 +1.5
392,073 + ABID97_RS01970 0.44 -0.9
392,074 - ABID97_RS01970 0.44 +0.5
392,074 - ABID97_RS01970 0.44 -0.5
392,074 - ABID97_RS01970 0.44 +0.5
392,079 + ABID97_RS01970 0.44 +1.9
392,079 + ABID97_RS01970 0.44 -0.3
392,080 - ABID97_RS01970 0.44 +2.2
392,106 + ABID97_RS01970 0.46 -0.3
392,107 - ABID97_RS01970 0.46 -0.1
392,107 - ABID97_RS01970 0.46 -0.1
392,235 + ABID97_RS01970 0.51 -0.1
392,235 + ABID97_RS01970 0.51 -0.3
392,236 - ABID97_RS01970 0.51 +0.1
392,469 + ABID97_RS01970 0.62 +0.8
392,469 + ABID97_RS01970 0.62 -0.7
392,469 + ABID97_RS01970 0.62 +0.3
392,469 + ABID97_RS01970 0.62 -1.0
392,469 + ABID97_RS01970 0.62 +0.3
392,469 + ABID97_RS01970 0.62 -0.1
392,470 - ABID97_RS01970 0.62 +0.3
392,470 - ABID97_RS01970 0.62 +0.2
392,556 + ABID97_RS01970 0.65 +0.4
392,637 + ABID97_RS01970 0.69 -0.6
392,638 - ABID97_RS01970 0.69 +1.4
392,638 - ABID97_RS01970 0.69 -0.3
392,638 - ABID97_RS01970 0.69 -0.9
392,638 - ABID97_RS01970 0.69 -0.4
392,638 - ABID97_RS01970 0.69 +2.0
392,638 - ABID97_RS01970 0.69 +0.2
392,691 + ABID97_RS01970 0.71 +0.3
392,691 + ABID97_RS01970 0.71 -0.3
392,692 - ABID97_RS01970 0.71 +0.5
392,904 + ABID97_RS01970 0.81 -0.2
392,904 + ABID97_RS01970 0.81 +0.1
392,905 - ABID97_RS01970 0.81 +0.2
392,937 + ABID97_RS01970 0.82 +1.0
392,938 - ABID97_RS01970 0.82 +0.4
393,383 + -0.7
393,756 + ABID97_RS01975 0.29 -0.7
393,757 - ABID97_RS01975 0.29 -1.7
393,885 + ABID97_RS01975 0.40 -1.7
394,077 + ABID97_RS01975 0.56 -0.8
394,078 - ABID97_RS01975 0.57 -0.5
394,078 - ABID97_RS01975 0.57 -0.4
394,116 + ABID97_RS01975 0.60 -3.3
394,116 + ABID97_RS01975 0.60 -0.4
394,116 + ABID97_RS01975 0.60 -1.3
394,117 - ABID97_RS01975 0.60 -0.7
394,117 - ABID97_RS01975 0.60 -0.3
394,117 - ABID97_RS01975 0.60 -0.6
394,161 + ABID97_RS01975 0.64 -0.5
394,161 + ABID97_RS01975 0.64 -0.3
394,162 - ABID97_RS01975 0.64 -0.6
394,173 + ABID97_RS01975 0.65 -0.7
394,173 + ABID97_RS01975 0.65 -0.6
394,174 - ABID97_RS01975 0.65 -0.1
394,176 + ABID97_RS01975 0.65 -0.5
394,177 - ABID97_RS01975 0.65 +0.3
394,177 - ABID97_RS01975 0.65 -1.3
394,177 - ABID97_RS01975 0.65 -1.2
394,177 - ABID97_RS01975 0.65 -1.6

Or see this region's nucleotide sequence