Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01635

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS01625 and ABID97_RS01630 are separated by 37 nucleotidesABID97_RS01630 and ABID97_RS01635 are separated by 148 nucleotidesABID97_RS01635 and ABID97_RS01640 are separated by 52 nucleotides ABID97_RS01625: ABID97_RS01625 - hypothetical protein, at 319,574 to 320,035 _RS01625 ABID97_RS01630: ABID97_RS01630 - YiaA/YiaB family inner membrane protein, at 320,073 to 320,576 _RS01630 ABID97_RS01635: ABID97_RS01635 - MFS transporter, at 320,725 to 322,680 _RS01635 ABID97_RS01640: ABID97_RS01640 - hypothetical protein, at 322,733 to 323,587 _RS01640 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -2 -1 0 1 2at 319.779 kb on + strand, within ABID97_RS01625at 319.779 kb on + strand, within ABID97_RS01625at 319.779 kb on + strand, within ABID97_RS01625at 319.780 kb on - strand, within ABID97_RS01625at 319.780 kb on - strand, within ABID97_RS01625at 319.780 kb on - strand, within ABID97_RS01625at 319.780 kb on - strand, within ABID97_RS01625at 320.236 kb on + strand, within ABID97_RS01630at 320.236 kb on + strand, within ABID97_RS01630at 320.237 kb on - strand, within ABID97_RS01630at 320.237 kb on - strand, within ABID97_RS01630at 320.237 kb on - strand, within ABID97_RS01630at 320.237 kb on - strand, within ABID97_RS01630at 320.416 kb on + strand, within ABID97_RS01630at 320.416 kb on + strand, within ABID97_RS01630at 320.416 kb on + strand, within ABID97_RS01630at 320.416 kb on + strand, within ABID97_RS01630at 320.416 kb on + strandat 320.416 kb on + strand, within ABID97_RS01630at 320.417 kb on - strand, within ABID97_RS01630at 320.417 kb on - strand, within ABID97_RS01630at 320.593 kb on - strandat 320.681 kb on + strandat 320.688 kb on + strandat 320.891 kb on + strandat 320.892 kb on - strandat 320.892 kb on - strandat 320.892 kb on - strandat 321.090 kb on - strand, within ABID97_RS01635at 321.356 kb on + strand, within ABID97_RS01635at 321.357 kb on - strand, within ABID97_RS01635at 321.380 kb on + strand, within ABID97_RS01635at 321.380 kb on + strand, within ABID97_RS01635at 321.380 kb on + strand, within ABID97_RS01635at 321.381 kb on - strand, within ABID97_RS01635at 321.381 kb on - strand, within ABID97_RS01635at 321.381 kb on - strand, within ABID97_RS01635at 321.564 kb on - strand, within ABID97_RS01635at 321.564 kb on - strand, within ABID97_RS01635at 321.580 kb on - strand, within ABID97_RS01635at 321.699 kb on - strand, within ABID97_RS01635at 322.236 kb on - strand, within ABID97_RS01635at 322.508 kb on + strandat 322.508 kb on + strandat 322.508 kb on + strandat 322.509 kb on - strandat 322.509 kb on - strandat 322.509 kb on - strandat 322.509 kb on - strandat 322.734 kb on + strandat 322.734 kb on + strandat 322.734 kb on + strandat 322.734 kb on + strandat 322.734 kb on + strandat 322.734 kb on + strandat 322.735 kb on - strandat 322.735 kb on - strandat 322.735 kb on - strandat 322.887 kb on + strand, within ABID97_RS01640at 322.887 kb on + strand, within ABID97_RS01640at 322.887 kb on + strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.888 kb on - strand, within ABID97_RS01640at 322.929 kb on + strand, within ABID97_RS01640at 322.929 kb on + strand, within ABID97_RS01640at 322.929 kb on + strand, within ABID97_RS01640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
319,779 + ABID97_RS01625 0.44 +0.3
319,779 + ABID97_RS01625 0.44 -0.1
319,779 + ABID97_RS01625 0.44 +0.6
319,780 - ABID97_RS01625 0.45 -0.1
319,780 - ABID97_RS01625 0.45 -0.2
319,780 - ABID97_RS01625 0.45 -0.2
319,780 - ABID97_RS01625 0.45 -0.2
320,236 + ABID97_RS01630 0.32 +0.1
320,236 + ABID97_RS01630 0.32 -0.1
320,237 - ABID97_RS01630 0.33 +0.1
320,237 - ABID97_RS01630 0.33 +0.1
320,237 - ABID97_RS01630 0.33 -1.3
320,237 - ABID97_RS01630 0.33 -0.3
320,416 + ABID97_RS01630 0.68 -0.2
320,416 + ABID97_RS01630 0.68 -0.5
320,416 + ABID97_RS01630 0.68 +0.2
320,416 + ABID97_RS01630 0.68 -0.3
320,416 + +1.3
320,416 + ABID97_RS01630 0.68 +0.0
320,417 - ABID97_RS01630 0.68 -0.2
320,417 - ABID97_RS01630 0.68 +1.5
320,593 - +0.6
320,681 + +1.9
320,688 + -0.2
320,891 + -0.5
320,892 - +0.2
320,892 - -0.4
320,892 - -0.8
321,090 - ABID97_RS01635 0.19 +0.3
321,356 + ABID97_RS01635 0.32 +0.3
321,357 - ABID97_RS01635 0.32 -0.3
321,380 + ABID97_RS01635 0.33 +0.1
321,380 + ABID97_RS01635 0.33 +0.6
321,380 + ABID97_RS01635 0.33 +0.4
321,381 - ABID97_RS01635 0.34 +1.6
321,381 - ABID97_RS01635 0.34 +1.0
321,381 - ABID97_RS01635 0.34 +0.6
321,564 - ABID97_RS01635 0.43 +0.8
321,564 - ABID97_RS01635 0.43 +0.1
321,580 - ABID97_RS01635 0.44 +0.3
321,699 - ABID97_RS01635 0.50 -0.8
322,236 - ABID97_RS01635 0.77 -0.2
322,508 + +0.6
322,508 + +2.2
322,508 + +0.7
322,509 - +0.2
322,509 - -0.4
322,509 - -0.7
322,509 - +0.5
322,734 + -1.2
322,734 + -0.0
322,734 + +0.1
322,734 + -1.0
322,734 + +0.2
322,734 + +1.4
322,735 - -0.2
322,735 - +0.2
322,735 - -0.4
322,887 + ABID97_RS01640 0.18 +0.5
322,887 + ABID97_RS01640 0.18 -1.8
322,887 + ABID97_RS01640 0.18 -0.6
322,888 - ABID97_RS01640 0.18 +1.9
322,888 - ABID97_RS01640 0.18 +1.1
322,888 - ABID97_RS01640 0.18 -0.1
322,888 - ABID97_RS01640 0.18 -0.8
322,888 - ABID97_RS01640 0.18 -0.5
322,888 - ABID97_RS01640 0.18 +1.0
322,888 - ABID97_RS01640 0.18 +0.0
322,888 - ABID97_RS01640 0.18 -0.4
322,888 - ABID97_RS01640 0.18 -0.6
322,929 + ABID97_RS01640 0.23 -1.0
322,929 + ABID97_RS01640 0.23 -0.1
322,929 + ABID97_RS01640 0.23 -0.6

Or see this region's nucleotide sequence