Experiment: phage_S63 51MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09865 and ABID97_RS09870 are separated by 10 nucleotides ABID97_RS09870 and ABID97_RS09875 are separated by 1 nucleotides ABID97_RS09875 and ABID97_RS09880 are separated by 417 nucleotides
ABID97_RS09865: ABID97_RS09865 - hypothetical protein, at 2,051,111 to 2,051,473
_RS09865
ABID97_RS09870: ABID97_RS09870 - helix-turn-helix transcriptional regulator, at 2,051,484 to 2,052,098
_RS09870
ABID97_RS09875: ABID97_RS09875 - hypothetical protein, at 2,052,100 to 2,052,585
_RS09875
ABID97_RS09880: ABID97_RS09880 - hypothetical protein, at 2,053,003 to 2,053,965
_RS09880
Position (kb)
2052
2053 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2051.113 kb on - strand at 2051.477 kb on - strand at 2051.519 kb on + strand at 2051.612 kb on + strand, within ABID97_RS09870 at 2051.645 kb on - strand, within ABID97_RS09870 at 2051.648 kb on + strand, within ABID97_RS09870 at 2051.654 kb on - strand, within ABID97_RS09870 at 2051.657 kb on + strand, within ABID97_RS09870 at 2051.658 kb on - strand, within ABID97_RS09870 at 2051.696 kb on + strand, within ABID97_RS09870 at 2051.697 kb on - strand, within ABID97_RS09870 at 2051.697 kb on - strand, within ABID97_RS09870 at 2051.876 kb on + strand, within ABID97_RS09870 at 2051.876 kb on + strand, within ABID97_RS09870 at 2052.062 kb on + strand at 2052.063 kb on - strand at 2052.102 kb on - strand at 2052.258 kb on + strand, within ABID97_RS09875 at 2052.498 kb on + strand, within ABID97_RS09875 at 2052.500 kb on + strand, within ABID97_RS09875 at 2052.501 kb on - strand, within ABID97_RS09875 at 2052.501 kb on - strand, within ABID97_RS09875 at 2052.597 kb on + strand at 2052.598 kb on - strand at 2052.631 kb on + strand at 2052.632 kb on - strand at 2052.632 kb on - strand at 2052.632 kb on - strand at 2052.667 kb on + strand at 2052.667 kb on + strand at 2052.668 kb on - strand at 2052.668 kb on - strand at 2052.668 kb on - strand at 2052.668 kb on - strand at 2052.691 kb on - strand at 2052.749 kb on + strand at 2052.749 kb on + strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.750 kb on - strand at 2052.754 kb on + strand at 2052.776 kb on + strand at 2052.776 kb on + strand at 2052.776 kb on + strand at 2052.777 kb on - strand at 2052.777 kb on - strand at 2052.968 kb on + strand at 2052.968 kb on + strand at 2052.969 kb on - strand at 2053.060 kb on + strand at 2053.081 kb on + strand at 2053.082 kb on - strand at 2053.134 kb on - strand, within ABID97_RS09880 at 2053.317 kb on + strand, within ABID97_RS09880 at 2053.318 kb on - strand, within ABID97_RS09880 at 2053.328 kb on + strand, within ABID97_RS09880 at 2053.329 kb on - strand, within ABID97_RS09880 at 2053.329 kb on - strand, within ABID97_RS09880 at 2053.385 kb on + strand, within ABID97_RS09880 at 2053.385 kb on + strand, within ABID97_RS09880 at 2053.408 kb on - strand, within ABID97_RS09880
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 51MOI remove 2,051,113 - -0.0 2,051,477 - -0.1 2,051,519 + +0.4 2,051,612 + ABID97_RS09870 0.21 -0.2 2,051,645 - ABID97_RS09870 0.26 -0.0 2,051,648 + ABID97_RS09870 0.27 -0.2 2,051,654 - ABID97_RS09870 0.28 +0.4 2,051,657 + ABID97_RS09870 0.28 +0.2 2,051,658 - ABID97_RS09870 0.28 -0.8 2,051,696 + ABID97_RS09870 0.34 +0.4 2,051,697 - ABID97_RS09870 0.35 +0.4 2,051,697 - ABID97_RS09870 0.35 -0.6 2,051,876 + ABID97_RS09870 0.64 +0.6 2,051,876 + ABID97_RS09870 0.64 -0.5 2,052,062 + -0.3 2,052,063 - -1.5 2,052,102 - +1.9 2,052,258 + ABID97_RS09875 0.33 +3.0 2,052,498 + ABID97_RS09875 0.82 -0.4 2,052,500 + ABID97_RS09875 0.82 +0.3 2,052,501 - ABID97_RS09875 0.83 +3.0 2,052,501 - ABID97_RS09875 0.83 +3.0 2,052,597 + -0.6 2,052,598 - -1.4 2,052,631 + +0.3 2,052,632 - +0.7 2,052,632 - -1.0 2,052,632 - -0.8 2,052,667 + -0.2 2,052,667 + -0.2 2,052,668 - -0.8 2,052,668 - -0.3 2,052,668 - -0.6 2,052,668 - -0.2 2,052,691 - -0.5 2,052,749 + -1.3 2,052,749 + +1.1 2,052,750 - -0.2 2,052,750 - +1.4 2,052,750 - +1.0 2,052,750 - -0.6 2,052,750 - +0.7 2,052,750 - +1.2 2,052,750 - -0.4 2,052,750 - +0.3 2,052,754 + -0.5 2,052,776 + -1.0 2,052,776 + -0.1 2,052,776 + +0.2 2,052,777 - +2.0 2,052,777 - +0.8 2,052,968 + -0.8 2,052,968 + -0.1 2,052,969 - -0.6 2,053,060 + -0.2 2,053,081 + -1.0 2,053,082 - -0.5 2,053,134 - ABID97_RS09880 0.14 -0.6 2,053,317 + ABID97_RS09880 0.33 -0.5 2,053,318 - ABID97_RS09880 0.33 -0.5 2,053,328 + ABID97_RS09880 0.34 -0.1 2,053,329 - ABID97_RS09880 0.34 +0.8 2,053,329 - ABID97_RS09880 0.34 -0.2 2,053,385 + ABID97_RS09880 0.40 -0.3 2,053,385 + ABID97_RS09880 0.40 +2.0 2,053,408 - ABID97_RS09880 0.42 +0.0
Or see this region's nucleotide sequence