Experiment: phage_S63 51MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09310 and ABID97_RS09315 are separated by 32 nucleotides ABID97_RS09315 and ABID97_RS09320 are separated by 71 nucleotides
ABID97_RS09310: ABID97_RS09310 - MFS transporter, at 1,956,914 to 1,958,356
_RS09310
ABID97_RS09315: ABID97_RS09315 - substrate-binding domain-containing protein, at 1,958,389 to 1,959,495
_RS09315
ABID97_RS09320: ABID97_RS09320 - aspartate aminotransferase family protein, at 1,959,567 to 1,960,922
_RS09320
Position (kb)
1958
1959
1960 Strain fitness (log2 ratio)
-1
0
1
2 at 1957.416 kb on + strand, within ABID97_RS09310 at 1957.417 kb on - strand, within ABID97_RS09310 at 1957.447 kb on - strand, within ABID97_RS09310 at 1957.447 kb on - strand, within ABID97_RS09310 at 1957.471 kb on - strand, within ABID97_RS09310 at 1957.492 kb on - strand, within ABID97_RS09310 at 1957.492 kb on - strand, within ABID97_RS09310 at 1958.052 kb on + strand, within ABID97_RS09310 at 1958.146 kb on - strand, within ABID97_RS09310 at 1958.337 kb on + strand at 1958.368 kb on + strand at 1958.368 kb on + strand at 1958.939 kb on + strand, within ABID97_RS09315 at 1959.531 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.680 kb on - strand at 1959.776 kb on - strand, within ABID97_RS09320 at 1959.932 kb on - strand, within ABID97_RS09320 at 1959.961 kb on + strand, within ABID97_RS09320 at 1959.961 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.994 kb on + strand, within ABID97_RS09320 at 1959.995 kb on - strand, within ABID97_RS09320 at 1959.995 kb on - strand, within ABID97_RS09320 at 1960.454 kb on - strand, within ABID97_RS09320
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 51MOI remove 1,957,416 + ABID97_RS09310 0.35 -0.7 1,957,417 - ABID97_RS09310 0.35 +0.8 1,957,447 - ABID97_RS09310 0.37 +0.6 1,957,447 - ABID97_RS09310 0.37 -0.4 1,957,471 - ABID97_RS09310 0.39 -0.6 1,957,492 - ABID97_RS09310 0.40 -0.2 1,957,492 - ABID97_RS09310 0.40 -0.3 1,958,052 + ABID97_RS09310 0.79 +0.5 1,958,146 - ABID97_RS09310 0.85 -1.2 1,958,337 + -0.3 1,958,368 + -0.6 1,958,368 + +0.5 1,958,939 + ABID97_RS09315 0.50 +0.8 1,959,531 - -0.6 1,959,680 - -0.7 1,959,680 - -0.4 1,959,680 - -0.4 1,959,680 - +2.0 1,959,776 - ABID97_RS09320 0.15 +1.4 1,959,932 - ABID97_RS09320 0.27 +0.4 1,959,961 + ABID97_RS09320 0.29 +0.1 1,959,961 + ABID97_RS09320 0.29 +0.7 1,959,994 + ABID97_RS09320 0.31 -0.2 1,959,994 + ABID97_RS09320 0.31 +0.0 1,959,994 + ABID97_RS09320 0.31 -0.4 1,959,995 - ABID97_RS09320 0.32 +1.4 1,959,995 - ABID97_RS09320 0.32 +1.1 1,960,454 - ABID97_RS09320 0.65 +0.6
Or see this region's nucleotide sequence