Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29480

Experiment: phage_S63 5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29470 and ABID97_RS29475 are separated by 1 nucleotidesABID97_RS29475 and ABID97_RS29480 are separated by 22 nucleotidesABID97_RS29480 and ABID97_RS29485 are separated by 158 nucleotides ABID97_RS29470: ABID97_RS29470 - ATP-binding cassette domain-containing protein, at 818,060 to 818,767 _RS29470 ABID97_RS29475: ABID97_RS29475 - ATP-binding cassette domain-containing protein, at 818,769 to 819,476 _RS29475 ABID97_RS29480: ABID97_RS29480 - helix-turn-helix domain-containing protein, at 819,499 to 820,482 _RS29480 ABID97_RS29485: ABID97_RS29485 - tripartite tricarboxylate transporter substrate binding protein, at 820,641 to 821,615 _RS29485 Position (kb) 819 820 821Strain fitness (log2 ratio) -2 -1 0 1 2at 819.379 kb on - strand, within ABID97_RS29475at 819.475 kb on - strandat 820.013 kb on + strand, within ABID97_RS29480at 820.157 kb on + strand, within ABID97_RS29480at 820.526 kb on + strandat 821.348 kb on - strand, within ABID97_RS29485at 821.348 kb on - strand, within ABID97_RS29485

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
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819,379 - ABID97_RS29475 0.86 -0.5
819,475 - +1.5
820,013 + ABID97_RS29480 0.52 +0.6
820,157 + ABID97_RS29480 0.67 +0.2
820,526 + -0.6
821,348 - ABID97_RS29485 0.73 -2.1
821,348 - ABID97_RS29485 0.73 +2.6

Or see this region's nucleotide sequence