Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28710 and ABID97_RS28715 overlap by 4 nucleotides ABID97_RS28715 and ABID97_RS28720 are separated by 167 nucleotides ABID97_RS28720 and ABID97_RS28725 are separated by 120 nucleotides ABID97_RS28725 and ABID97_RS28730 are separated by 52 nucleotides
ABID97_RS28710: ABID97_RS28710 - xanthine dehydrogenase family protein subunit M, at 659,211 to 660,161
_RS28710
ABID97_RS28715: ABID97_RS28715 - aldehyde dehydrogenase iron-sulfur subunit PaoA, at 660,158 to 660,805
_RS28715
ABID97_RS28720: ABID97_RS28720 - AraC family transcriptional regulator, at 660,973 to 661,935
_RS28720
ABID97_RS28725: ABID97_RS28725 - hypothetical protein, at 662,056 to 662,379
_RS28725
ABID97_RS28730: ABID97_RS28730 - PAS domain-containing sensor histidine kinase, at 662,432 to 663,580
_RS28730
Position (kb) 660
661
662 Strain fitness (log2 ratio) -1
0
1
2 at 660.145 kb on + strand at 660.145 kb on + strand at 660.145 kb on + strand at 660.146 kb on - strand at 660.366 kb on + strand, within ABID97_RS28715 at 660.367 kb on - strand, within ABID97_RS28715 at 660.967 kb on - strand at 660.967 kb on - strand at 661.193 kb on + strand, within ABID97_RS28720 at 661.298 kb on + strand, within ABID97_RS28720 at 661.701 kb on - strand, within ABID97_RS28720 at 662.250 kb on - strand, within ABID97_RS28725 at 662.325 kb on - strand, within ABID97_RS28725 at 662.740 kb on - strand, within ABID97_RS28730 at 662.740 kb on - strand, within ABID97_RS28730
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 660,145 + -1.0 660,145 + -0.6 660,145 + -0.3 660,146 - -0.4 660,366 + ABID97_RS28715 0.32 -0.6 660,367 - ABID97_RS28715 0.32 +0.0 660,967 - -0.8 660,967 - -0.9 661,193 + ABID97_RS28720 0.23 -0.9 661,298 + ABID97_RS28720 0.34 -1.0 661,701 - ABID97_RS28720 0.76 -0.3 662,250 - ABID97_RS28725 0.60 +2.2 662,325 - ABID97_RS28725 0.83 +1.4 662,740 - ABID97_RS28730 0.27 -1.0 662,740 - ABID97_RS28730 0.27 -1.0
Or see this region's nucleotide sequence