Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28255

Experiment: phage_S63 5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28250 and ABID97_RS28255 overlap by 4 nucleotidesABID97_RS28255 and ABID97_RS28260 overlap by 4 nucleotidesABID97_RS28260 and ABID97_RS28265 overlap by 4 nucleotides ABID97_RS28250: ABID97_RS28250 - acyl-CoA dehydrogenase family protein, at 569,793 to 570,959 _RS28250 ABID97_RS28255: ABID97_RS28255 - long-chain-fatty-acid--CoA ligase, at 570,956 to 572,650 _RS28255 ABID97_RS28260: ABID97_RS28260 - enoyl-CoA hydratase/isomerase family protein, at 572,647 to 573,453 _RS28260 ABID97_RS28265: ABID97_RS28265 - OB-fold domain-containing protein, at 573,450 to 573,839 _RS28265 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -1 0 1 2 3at 571.421 kb on + strand, within ABID97_RS28255at 572.139 kb on + strand, within ABID97_RS28255at 572.294 kb on + strand, within ABID97_RS28255at 572.534 kb on + strandat 573.549 kb on + strand, within ABID97_RS28265

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
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571,421 + ABID97_RS28255 0.27 -0.8
572,139 + ABID97_RS28255 0.70 -0.8
572,294 + ABID97_RS28255 0.79 +3.4
572,534 + -0.0
573,549 + ABID97_RS28265 0.25 -0.1

Or see this region's nucleotide sequence