Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27985

Experiment: phage_S63 5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS27980 and ABID97_RS27985 are separated by 22 nucleotidesABID97_RS27985 and ABID97_RS27990 are separated by 65 nucleotidesABID97_RS27990 and ABID97_RS27995 are separated by 20 nucleotides ABID97_RS27980: ABID97_RS27980 - alcohol dehydrogenase catalytic domain-containing protein, at 514,710 to 515,837 _RS27980 ABID97_RS27985: ABID97_RS27985 - amino acid ABC transporter substrate-binding protein, at 515,860 to 517,083 _RS27985 ABID97_RS27990: ABID97_RS27990 - carboxymuconolactone decarboxylase family protein, at 517,149 to 517,679 _RS27990 ABID97_RS27995: ABID97_RS27995 - VOC family protein, at 517,700 to 518,707 _RS27995 Position (kb) 515 516 517 518Strain fitness (log2 ratio) -1 0 1 2at 515.333 kb on - strand, within ABID97_RS27980at 515.426 kb on - strand, within ABID97_RS27980at 515.560 kb on + strand, within ABID97_RS27980at 516.791 kb on + strand, within ABID97_RS27985at 517.211 kb on - strand, within ABID97_RS27990at 517.729 kb on - strandat 518.011 kb on - strand, within ABID97_RS27995at 518.070 kb on + strand, within ABID97_RS27995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
remove
515,333 - ABID97_RS27980 0.55 +0.4
515,426 - ABID97_RS27980 0.63 +1.5
515,560 + ABID97_RS27980 0.75 +2.3
516,791 + ABID97_RS27985 0.76 -0.8
517,211 - ABID97_RS27990 0.12 -0.9
517,729 - +0.8
518,011 - ABID97_RS27995 0.31 +0.4
518,070 + ABID97_RS27995 0.37 +0.3

Or see this region's nucleotide sequence