Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23595 and ABID97_RS23600 are separated by 919 nucleotides ABID97_RS23600 and ABID97_RS23605 are separated by 14 nucleotides ABID97_RS23605 and ABID97_RS23610 are separated by 50 nucleotides
ABID97_RS23595: ABID97_RS23595 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,881,548 to 4,882,849
_RS23595
ABID97_RS23600: ABID97_RS23600 - hypothetical protein, at 4,883,769 to 4,884,275
_RS23600
ABID97_RS23605: ABID97_RS23605 - helix-turn-helix transcriptional regulator, at 4,884,290 to 4,884,619
_RS23605
ABID97_RS23610: ABID97_RS23610 - HlyD family type I secretion periplasmic adaptor subunit, at 4,884,670 to 4,886,007
_RS23610
Position (kb) 4883
4884
4885 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4882.849 kb on + strand at 4882.986 kb on + strand at 4882.987 kb on - strand at 4882.987 kb on - strand at 4882.987 kb on - strand at 4883.076 kb on + strand at 4883.076 kb on + strand at 4883.085 kb on - strand at 4883.237 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.384 kb on - strand at 4883.384 kb on - strand at 4883.409 kb on + strand at 4883.409 kb on + strand at 4883.410 kb on - strand at 4883.506 kb on + strand at 4883.506 kb on + strand at 4883.646 kb on - strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.717 kb on - strand at 4883.717 kb on - strand at 4883.717 kb on - strand at 4883.717 kb on - strand at 4883.893 kb on - strand, within ABID97_RS23600 at 4884.279 kb on + strand at 4884.280 kb on - strand at 4884.315 kb on - strand at 4884.320 kb on + strand at 4884.355 kb on + strand, within ABID97_RS23605 at 4884.355 kb on + strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.476 kb on + strand, within ABID97_RS23605 at 4884.476 kb on + strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.478 kb on + strand, within ABID97_RS23605 at 4884.478 kb on + strand, within ABID97_RS23605 at 4884.839 kb on + strand, within ABID97_RS23610 at 4884.842 kb on + strand, within ABID97_RS23610 at 4884.842 kb on + strand, within ABID97_RS23610 at 4884.842 kb on + strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.924 kb on - strand, within ABID97_RS23610 at 4885.079 kb on + strand, within ABID97_RS23610 at 4885.079 kb on + strand, within ABID97_RS23610
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 4,882,849 + +3.3 4,882,986 + -0.8 4,882,987 - -1.3 4,882,987 - -1.0 4,882,987 - -1.0 4,883,076 + +0.9 4,883,076 + -0.8 4,883,085 - +1.9 4,883,237 - +0.9 4,883,354 - +0.0 4,883,354 - -1.0 4,883,354 - -1.5 4,883,354 - -0.6 4,883,354 - -0.3 4,883,354 - +0.6 4,883,354 - +0.4 4,883,384 - -0.4 4,883,384 - +0.6 4,883,409 + -0.8 4,883,409 + +0.4 4,883,410 - -1.3 4,883,506 + +0.3 4,883,506 + -1.8 4,883,646 - +1.2 4,883,716 + +0.6 4,883,716 + -0.6 4,883,716 + +0.5 4,883,716 + -0.9 4,883,716 + -0.8 4,883,716 + -0.6 4,883,717 - +0.8 4,883,717 - +0.4 4,883,717 - -0.5 4,883,717 - +0.6 4,883,893 - ABID97_RS23600 0.24 -0.7 4,884,279 + +0.6 4,884,280 - +0.6 4,884,315 - -0.9 4,884,320 + -0.4 4,884,355 + ABID97_RS23605 0.20 +0.5 4,884,355 + ABID97_RS23605 0.20 -0.1 4,884,356 - ABID97_RS23605 0.20 +0.3 4,884,356 - ABID97_RS23605 0.20 -0.3 4,884,356 - ABID97_RS23605 0.20 +1.3 4,884,356 - ABID97_RS23605 0.20 -0.8 4,884,476 + ABID97_RS23605 0.56 -0.5 4,884,476 + ABID97_RS23605 0.56 -0.9 4,884,477 - ABID97_RS23605 0.57 +0.1 4,884,477 - ABID97_RS23605 0.57 -0.7 4,884,477 - ABID97_RS23605 0.57 -0.9 4,884,477 - ABID97_RS23605 0.57 -1.0 4,884,477 - ABID97_RS23605 0.57 -0.8 4,884,478 + ABID97_RS23605 0.57 -0.1 4,884,478 + ABID97_RS23605 0.57 -0.2 4,884,839 + ABID97_RS23610 0.13 +0.5 4,884,842 + ABID97_RS23610 0.13 -0.9 4,884,842 + ABID97_RS23610 0.13 +0.5 4,884,842 + ABID97_RS23610 0.13 -0.5 4,884,843 - ABID97_RS23610 0.13 +0.9 4,884,843 - ABID97_RS23610 0.13 +0.3 4,884,843 - ABID97_RS23610 0.13 -0.5 4,884,843 - ABID97_RS23610 0.13 -1.2 4,884,924 - ABID97_RS23610 0.19 +0.3 4,885,079 + ABID97_RS23610 0.31 -1.1 4,885,079 + ABID97_RS23610 0.31 -1.0
Or see this region's nucleotide sequence