Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12435

Experiment: phage_S63 5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12430 and ABID97_RS12435 are separated by 0 nucleotidesABID97_RS12435 and ABID97_RS12440 are separated by 20 nucleotides ABID97_RS12430: ABID97_RS12430 - tripartite tricarboxylate transporter substrate binding protein, at 2,575,445 to 2,576,437 _RS12430 ABID97_RS12435: ABID97_RS12435 - MaoC family dehydratase N-terminal domain-containing protein, at 2,576,438 to 2,577,343 _RS12435 ABID97_RS12440: ABID97_RS12440 - CaiB/BaiF CoA-transferase family protein, at 2,577,364 to 2,578,545 _RS12440 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -1 0 1 2at 2575.724 kb on + strand, within ABID97_RS12430at 2575.775 kb on + strand, within ABID97_RS12430at 2575.776 kb on - strand, within ABID97_RS12430at 2575.928 kb on + strand, within ABID97_RS12430at 2575.929 kb on - strand, within ABID97_RS12430at 2576.015 kb on + strand, within ABID97_RS12430at 2576.169 kb on + strand, within ABID97_RS12430at 2576.639 kb on + strand, within ABID97_RS12435at 2576.640 kb on - strand, within ABID97_RS12435at 2576.640 kb on - strand, within ABID97_RS12435at 2576.640 kb on - strand, within ABID97_RS12435at 2577.506 kb on - strand, within ABID97_RS12440at 2577.775 kb on + strand, within ABID97_RS12440at 2577.880 kb on + strand, within ABID97_RS12440at 2577.881 kb on - strand, within ABID97_RS12440at 2577.881 kb on - strand, within ABID97_RS12440at 2577.887 kb on - strand, within ABID97_RS12440at 2577.887 kb on - strand, within ABID97_RS12440at 2577.994 kb on + strand, within ABID97_RS12440at 2577.995 kb on - strand, within ABID97_RS12440at 2577.997 kb on + strand, within ABID97_RS12440at 2577.997 kb on + strand, within ABID97_RS12440at 2577.998 kb on - strand, within ABID97_RS12440at 2577.998 kb on - strand, within ABID97_RS12440at 2577.998 kb on - strand, within ABID97_RS12440at 2578.054 kb on + strand, within ABID97_RS12440at 2578.055 kb on - strand, within ABID97_RS12440at 2578.055 kb on - strand, within ABID97_RS12440at 2578.055 kb on - strand, within ABID97_RS12440at 2578.060 kb on + strand, within ABID97_RS12440

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
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2,575,724 + ABID97_RS12430 0.28 -0.5
2,575,775 + ABID97_RS12430 0.33 -0.4
2,575,776 - ABID97_RS12430 0.33 +0.6
2,575,928 + ABID97_RS12430 0.49 +0.2
2,575,929 - ABID97_RS12430 0.49 -0.0
2,576,015 + ABID97_RS12430 0.57 +2.1
2,576,169 + ABID97_RS12430 0.73 -0.3
2,576,639 + ABID97_RS12435 0.22 -1.4
2,576,640 - ABID97_RS12435 0.22 -0.6
2,576,640 - ABID97_RS12435 0.22 -0.4
2,576,640 - ABID97_RS12435 0.22 +0.7
2,577,506 - ABID97_RS12440 0.12 +0.8
2,577,775 + ABID97_RS12440 0.35 -0.0
2,577,880 + ABID97_RS12440 0.44 +1.7
2,577,881 - ABID97_RS12440 0.44 +0.7
2,577,881 - ABID97_RS12440 0.44 +2.1
2,577,887 - ABID97_RS12440 0.44 -0.7
2,577,887 - ABID97_RS12440 0.44 +0.7
2,577,994 + ABID97_RS12440 0.53 -0.6
2,577,995 - ABID97_RS12440 0.53 +1.7
2,577,997 + ABID97_RS12440 0.54 -0.7
2,577,997 + ABID97_RS12440 0.54 -0.2
2,577,998 - ABID97_RS12440 0.54 +0.5
2,577,998 - ABID97_RS12440 0.54 -1.0
2,577,998 - ABID97_RS12440 0.54 +0.7
2,578,054 + ABID97_RS12440 0.58 -0.7
2,578,055 - ABID97_RS12440 0.58 +0.7
2,578,055 - ABID97_RS12440 0.58 -1.7
2,578,055 - ABID97_RS12440 0.58 +0.8
2,578,060 + ABID97_RS12440 0.59 -1.0

Or see this region's nucleotide sequence