Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11080 and ABID97_RS11085 are separated by 40 nucleotides ABID97_RS11085 and ABID97_RS11090 are separated by 44 nucleotides
ABID97_RS11080: ABID97_RS11080 - ABC transporter substrate-binding protein, at 2,292,761 to 2,293,771
_RS11080
ABID97_RS11085: ABID97_RS11085 - ABC transporter permease, at 2,293,812 to 2,294,585
_RS11085
ABID97_RS11090: ABID97_RS11090 - tripartite tricarboxylate transporter substrate binding protein, at 2,294,630 to 2,295,613
_RS11090
Position (kb)
2293
2294
2295 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2292.831 kb on + strand at 2292.915 kb on + strand, within ABID97_RS11080 at 2292.915 kb on + strand, within ABID97_RS11080 at 2293.503 kb on + strand, within ABID97_RS11080 at 2293.504 kb on - strand, within ABID97_RS11080 at 2293.596 kb on + strand, within ABID97_RS11080 at 2293.596 kb on + strand, within ABID97_RS11080 at 2293.597 kb on - strand, within ABID97_RS11080 at 2293.641 kb on + strand, within ABID97_RS11080 at 2293.641 kb on + strand, within ABID97_RS11080 at 2293.647 kb on + strand, within ABID97_RS11080 at 2294.308 kb on + strand, within ABID97_RS11085 at 2294.309 kb on - strand, within ABID97_RS11085 at 2294.309 kb on - strand, within ABID97_RS11085 at 2294.480 kb on - strand, within ABID97_RS11085 at 2294.697 kb on + strand at 2295.000 kb on + strand, within ABID97_RS11090 at 2295.001 kb on - strand at 2295.001 kb on - strand, within ABID97_RS11090 at 2295.001 kb on - strand, within ABID97_RS11090 at 2295.001 kb on - strand, within ABID97_RS11090 at 2295.003 kb on + strand, within ABID97_RS11090 at 2295.003 kb on + strand, within ABID97_RS11090 at 2295.525 kb on + strand at 2295.526 kb on - strand at 2295.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 2,292,831 + +1.6 2,292,915 + ABID97_RS11080 0.15 -1.0 2,292,915 + ABID97_RS11080 0.15 +0.7 2,293,503 + ABID97_RS11080 0.73 +1.3 2,293,504 - ABID97_RS11080 0.73 +1.6 2,293,596 + ABID97_RS11080 0.83 +0.3 2,293,596 + ABID97_RS11080 0.83 -2.7 2,293,597 - ABID97_RS11080 0.83 -0.2 2,293,641 + ABID97_RS11080 0.87 +2.6 2,293,641 + ABID97_RS11080 0.87 -1.6 2,293,647 + ABID97_RS11080 0.88 +1.6 2,294,308 + ABID97_RS11085 0.64 +0.9 2,294,309 - ABID97_RS11085 0.64 -0.2 2,294,309 - ABID97_RS11085 0.64 -0.0 2,294,480 - ABID97_RS11085 0.86 +0.4 2,294,697 + +1.2 2,295,000 + ABID97_RS11090 0.38 -0.6 2,295,001 - +3.6 2,295,001 - ABID97_RS11090 0.38 +0.8 2,295,001 - ABID97_RS11090 0.38 +1.0 2,295,001 - ABID97_RS11090 0.38 +0.8 2,295,003 + ABID97_RS11090 0.38 +0.6 2,295,003 + ABID97_RS11090 0.38 +0.3 2,295,525 + -0.5 2,295,526 - -0.9 2,295,526 - -0.1
Or see this region's nucleotide sequence