Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11085

Experiment: phage_S63 5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11080 and ABID97_RS11085 are separated by 40 nucleotidesABID97_RS11085 and ABID97_RS11090 are separated by 44 nucleotides ABID97_RS11080: ABID97_RS11080 - ABC transporter substrate-binding protein, at 2,292,761 to 2,293,771 _RS11080 ABID97_RS11085: ABID97_RS11085 - ABC transporter permease, at 2,293,812 to 2,294,585 _RS11085 ABID97_RS11090: ABID97_RS11090 - tripartite tricarboxylate transporter substrate binding protein, at 2,294,630 to 2,295,613 _RS11090 Position (kb) 2293 2294 2295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2292.831 kb on + strandat 2292.915 kb on + strand, within ABID97_RS11080at 2292.915 kb on + strand, within ABID97_RS11080at 2293.503 kb on + strand, within ABID97_RS11080at 2293.504 kb on - strand, within ABID97_RS11080at 2293.596 kb on + strand, within ABID97_RS11080at 2293.596 kb on + strand, within ABID97_RS11080at 2293.597 kb on - strand, within ABID97_RS11080at 2293.641 kb on + strand, within ABID97_RS11080at 2293.641 kb on + strand, within ABID97_RS11080at 2293.647 kb on + strand, within ABID97_RS11080at 2294.308 kb on + strand, within ABID97_RS11085at 2294.309 kb on - strand, within ABID97_RS11085at 2294.309 kb on - strand, within ABID97_RS11085at 2294.480 kb on - strand, within ABID97_RS11085at 2294.697 kb on + strandat 2295.000 kb on + strand, within ABID97_RS11090at 2295.001 kb on - strandat 2295.001 kb on - strand, within ABID97_RS11090at 2295.001 kb on - strand, within ABID97_RS11090at 2295.001 kb on - strand, within ABID97_RS11090at 2295.003 kb on + strand, within ABID97_RS11090at 2295.003 kb on + strand, within ABID97_RS11090at 2295.525 kb on + strandat 2295.526 kb on - strandat 2295.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_S63 5 MOI
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2,292,831 + +1.6
2,292,915 + ABID97_RS11080 0.15 -1.0
2,292,915 + ABID97_RS11080 0.15 +0.7
2,293,503 + ABID97_RS11080 0.73 +1.3
2,293,504 - ABID97_RS11080 0.73 +1.6
2,293,596 + ABID97_RS11080 0.83 +0.3
2,293,596 + ABID97_RS11080 0.83 -2.7
2,293,597 - ABID97_RS11080 0.83 -0.2
2,293,641 + ABID97_RS11080 0.87 +2.6
2,293,641 + ABID97_RS11080 0.87 -1.6
2,293,647 + ABID97_RS11080 0.88 +1.6
2,294,308 + ABID97_RS11085 0.64 +0.9
2,294,309 - ABID97_RS11085 0.64 -0.2
2,294,309 - ABID97_RS11085 0.64 -0.0
2,294,480 - ABID97_RS11085 0.86 +0.4
2,294,697 + +1.2
2,295,000 + ABID97_RS11090 0.38 -0.6
2,295,001 - +3.6
2,295,001 - ABID97_RS11090 0.38 +0.8
2,295,001 - ABID97_RS11090 0.38 +1.0
2,295,001 - ABID97_RS11090 0.38 +0.8
2,295,003 + ABID97_RS11090 0.38 +0.6
2,295,003 + ABID97_RS11090 0.38 +0.3
2,295,525 + -0.5
2,295,526 - -0.9
2,295,526 - -0.1

Or see this region's nucleotide sequence