Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09405 and ABID97_RS09410 are separated by 58 nucleotides ABID97_RS09410 and ABID97_RS09415 are separated by 24 nucleotides ABID97_RS09415 and ABID97_RS09420 are separated by 33 nucleotides ABID97_RS09420 and ABID97_RS09425 are separated by 16 nucleotides
ABID97_RS09405: ABID97_RS09405 - xanthine dehydrogenase family protein subunit M, at 1,977,546 to 1,978,337
_RS09405
ABID97_RS09410: ABID97_RS09410 - MoxR family ATPase, at 1,978,396 to 1,979,298
_RS09410
ABID97_RS09415: ABID97_RS09415 - VWA domain-containing protein, at 1,979,323 to 1,980,537
_RS09415
ABID97_RS09420: ABID97_RS09420 - carbon monoxide dehydrogenase subunit G, at 1,980,571 to 1,981,209
_RS09420
ABID97_RS09425: ABID97_RS09425 - XdhC family protein, at 1,981,226 to 1,982,248
_RS09425
Position (kb)
1979
1980
1981 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1978.447 kb on + strand at 1978.630 kb on + strand, within ABID97_RS09410 at 1978.643 kb on - strand, within ABID97_RS09410 at 1978.714 kb on + strand, within ABID97_RS09410 at 1978.726 kb on + strand, within ABID97_RS09410 at 1978.841 kb on - strand, within ABID97_RS09410 at 1978.853 kb on - strand, within ABID97_RS09410 at 1978.967 kb on - strand, within ABID97_RS09410 at 1980.043 kb on + strand, within ABID97_RS09415 at 1980.136 kb on - strand, within ABID97_RS09415 at 1980.409 kb on + strand, within ABID97_RS09415 at 1980.409 kb on + strand, within ABID97_RS09415 at 1980.410 kb on - strand, within ABID97_RS09415 at 1980.700 kb on + strand, within ABID97_RS09420 at 1980.700 kb on + strand, within ABID97_RS09420 at 1980.790 kb on + strand, within ABID97_RS09420 at 1980.790 kb on + strand, within ABID97_RS09420 at 1980.943 kb on + strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420 at 1980.944 kb on - strand, within ABID97_RS09420
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 1,978,447 + +0.3 1,978,630 + ABID97_RS09410 0.26 +2.3 1,978,643 - ABID97_RS09410 0.27 +3.7 1,978,714 + ABID97_RS09410 0.35 -0.7 1,978,726 + ABID97_RS09410 0.37 -0.1 1,978,841 - ABID97_RS09410 0.49 +0.5 1,978,853 - ABID97_RS09410 0.51 -0.5 1,978,967 - ABID97_RS09410 0.63 -0.3 1,980,043 + ABID97_RS09415 0.59 -0.7 1,980,136 - ABID97_RS09415 0.67 +2.1 1,980,409 + ABID97_RS09415 0.89 -0.7 1,980,409 + ABID97_RS09415 0.89 -0.3 1,980,410 - ABID97_RS09415 0.89 -0.6 1,980,700 + ABID97_RS09420 0.20 -0.5 1,980,700 + ABID97_RS09420 0.20 +1.1 1,980,790 + ABID97_RS09420 0.34 -0.5 1,980,790 + ABID97_RS09420 0.34 -0.6 1,980,943 + ABID97_RS09420 0.58 -1.4 1,980,944 - ABID97_RS09420 0.58 -0.2 1,980,944 - ABID97_RS09420 0.58 -2.1 1,980,944 - ABID97_RS09420 0.58 +0.9 1,980,944 - ABID97_RS09420 0.58 +1.8
Or see this region's nucleotide sequence