Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06150 and ABID97_RS06155 overlap by 4 nucleotides ABID97_RS06155 and ABID97_RS06160 are separated by 84 nucleotides
ABID97_RS06150: ABID97_RS06150 - tyrosine recombinase XerC, at 1,296,162 to 1,297,187
_RS06150
ABID97_RS06155: ABID97_RS06155 - class I SAM-dependent methyltransferase, at 1,297,184 to 1,298,404
_RS06155
ABID97_RS06160: ABID97_RS06160 - GTP-binding protein, at 1,298,489 to 1,299,541
_RS06160
Position (kb)
1297
1298
1299 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1296.219 kb on + strand at 1296.228 kb on + strand at 1296.229 kb on - strand at 1296.229 kb on - strand at 1296.273 kb on + strand, within ABID97_RS06150 at 1296.273 kb on + strand, within ABID97_RS06150 at 1296.274 kb on - strand, within ABID97_RS06150 at 1296.435 kb on + strand, within ABID97_RS06150 at 1296.435 kb on + strand, within ABID97_RS06150 at 1296.436 kb on - strand, within ABID97_RS06150 at 1296.561 kb on + strand, within ABID97_RS06150 at 1296.562 kb on - strand, within ABID97_RS06150 at 1296.562 kb on - strand, within ABID97_RS06150 at 1296.621 kb on + strand, within ABID97_RS06150 at 1296.622 kb on - strand, within ABID97_RS06150 at 1296.622 kb on - strand, within ABID97_RS06150 at 1296.622 kb on - strand, within ABID97_RS06150 at 1297.068 kb on + strand, within ABID97_RS06150 at 1297.068 kb on + strand, within ABID97_RS06150 at 1297.068 kb on + strand, within ABID97_RS06150 at 1297.068 kb on + strand, within ABID97_RS06150 at 1297.068 kb on + strand, within ABID97_RS06150 at 1297.069 kb on - strand, within ABID97_RS06150 at 1297.069 kb on - strand, within ABID97_RS06150 at 1297.069 kb on - strand, within ABID97_RS06150 at 1297.069 kb on - strand, within ABID97_RS06150 at 1297.104 kb on + strand at 1297.105 kb on - strand at 1297.105 kb on - strand at 1297.628 kb on + strand, within ABID97_RS06155 at 1297.629 kb on - strand, within ABID97_RS06155 at 1297.629 kb on - strand, within ABID97_RS06155 at 1297.629 kb on - strand, within ABID97_RS06155 at 1297.862 kb on + strand, within ABID97_RS06155 at 1297.862 kb on + strand, within ABID97_RS06155 at 1298.159 kb on + strand, within ABID97_RS06155 at 1298.159 kb on + strand, within ABID97_RS06155 at 1298.159 kb on + strand, within ABID97_RS06155 at 1298.160 kb on - strand, within ABID97_RS06155 at 1298.160 kb on - strand, within ABID97_RS06155 at 1298.300 kb on + strand at 1298.300 kb on + strand at 1298.300 kb on + strand at 1298.300 kb on + strand at 1298.300 kb on + strand at 1298.300 kb on + strand at 1298.301 kb on - strand at 1298.301 kb on - strand at 1298.301 kb on - strand at 1298.301 kb on - strand at 1298.367 kb on - strand at 1298.852 kb on + strand, within ABID97_RS06160 at 1298.852 kb on + strand, within ABID97_RS06160 at 1298.852 kb on + strand, within ABID97_RS06160 at 1298.852 kb on + strand, within ABID97_RS06160 at 1298.852 kb on + strand, within ABID97_RS06160 at 1298.852 kb on + strand, within ABID97_RS06160 at 1298.853 kb on - strand, within ABID97_RS06160 at 1299.266 kb on + strand, within ABID97_RS06160 at 1299.266 kb on + strand, within ABID97_RS06160 at 1299.266 kb on + strand, within ABID97_RS06160 at 1299.266 kb on + strand, within ABID97_RS06160 at 1299.267 kb on - strand, within ABID97_RS06160 at 1299.267 kb on - strand, within ABID97_RS06160 at 1299.267 kb on - strand, within ABID97_RS06160 at 1299.267 kb on - strand, within ABID97_RS06160 at 1299.332 kb on + strand, within ABID97_RS06160 at 1299.332 kb on + strand, within ABID97_RS06160 at 1299.332 kb on + strand, within ABID97_RS06160 at 1299.332 kb on + strand, within ABID97_RS06160 at 1299.333 kb on - strand, within ABID97_RS06160 at 1299.333 kb on - strand, within ABID97_RS06160 at 1299.353 kb on + strand, within ABID97_RS06160 at 1299.353 kb on + strand, within ABID97_RS06160 at 1299.354 kb on - strand, within ABID97_RS06160
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 1,296,219 + -0.5 1,296,228 + -0.3 1,296,229 - -0.7 1,296,229 - -0.1 1,296,273 + ABID97_RS06150 0.11 +2.0 1,296,273 + ABID97_RS06150 0.11 +0.1 1,296,274 - ABID97_RS06150 0.11 +1.5 1,296,435 + ABID97_RS06150 0.27 +2.0 1,296,435 + ABID97_RS06150 0.27 +0.9 1,296,436 - ABID97_RS06150 0.27 -0.5 1,296,561 + ABID97_RS06150 0.39 -2.6 1,296,562 - ABID97_RS06150 0.39 +2.5 1,296,562 - ABID97_RS06150 0.39 -1.7 1,296,621 + ABID97_RS06150 0.45 +1.7 1,296,622 - ABID97_RS06150 0.45 +1.0 1,296,622 - ABID97_RS06150 0.45 -0.8 1,296,622 - ABID97_RS06150 0.45 -0.7 1,297,068 + ABID97_RS06150 0.88 +0.7 1,297,068 + ABID97_RS06150 0.88 -0.4 1,297,068 + ABID97_RS06150 0.88 -0.4 1,297,068 + ABID97_RS06150 0.88 +1.7 1,297,068 + ABID97_RS06150 0.88 +0.2 1,297,069 - ABID97_RS06150 0.88 -1.4 1,297,069 - ABID97_RS06150 0.88 +0.2 1,297,069 - ABID97_RS06150 0.88 +1.5 1,297,069 - ABID97_RS06150 0.88 -0.1 1,297,104 + +0.6 1,297,105 - +1.0 1,297,105 - -0.4 1,297,628 + ABID97_RS06155 0.36 -1.4 1,297,629 - ABID97_RS06155 0.36 -1.1 1,297,629 - ABID97_RS06155 0.36 -1.9 1,297,629 - ABID97_RS06155 0.36 -0.8 1,297,862 + ABID97_RS06155 0.56 -1.6 1,297,862 + ABID97_RS06155 0.56 -1.1 1,298,159 + ABID97_RS06155 0.80 +2.0 1,298,159 + ABID97_RS06155 0.80 -0.0 1,298,159 + ABID97_RS06155 0.80 -1.6 1,298,160 - ABID97_RS06155 0.80 -0.9 1,298,160 - ABID97_RS06155 0.80 -0.2 1,298,300 + -0.3 1,298,300 + -0.7 1,298,300 + +2.0 1,298,300 + -0.2 1,298,300 + -0.4 1,298,300 + -0.9 1,298,301 - +0.5 1,298,301 - +0.5 1,298,301 - -0.7 1,298,301 - +0.7 1,298,367 - -1.6 1,298,852 + ABID97_RS06160 0.34 +0.0 1,298,852 + ABID97_RS06160 0.34 +0.7 1,298,852 + ABID97_RS06160 0.34 +4.0 1,298,852 + ABID97_RS06160 0.34 +1.0 1,298,852 + ABID97_RS06160 0.34 +1.2 1,298,852 + ABID97_RS06160 0.34 +3.0 1,298,853 - ABID97_RS06160 0.35 +0.0 1,299,266 + ABID97_RS06160 0.74 +3.0 1,299,266 + ABID97_RS06160 0.74 +0.5 1,299,266 + ABID97_RS06160 0.74 +0.5 1,299,266 + ABID97_RS06160 0.74 +2.0 1,299,267 - ABID97_RS06160 0.74 +2.0 1,299,267 - ABID97_RS06160 0.74 +2.3 1,299,267 - ABID97_RS06160 0.74 +0.7 1,299,267 - ABID97_RS06160 0.74 +1.4 1,299,332 + ABID97_RS06160 0.80 +0.7 1,299,332 + ABID97_RS06160 0.80 +0.5 1,299,332 + ABID97_RS06160 0.80 +0.2 1,299,332 + ABID97_RS06160 0.80 -0.2 1,299,333 - ABID97_RS06160 0.80 +2.3 1,299,333 - ABID97_RS06160 0.80 +2.0 1,299,353 + ABID97_RS06160 0.82 +0.6 1,299,353 + ABID97_RS06160 0.82 +0.7 1,299,354 - ABID97_RS06160 0.82 +3.0
Or see this region's nucleotide sequence