Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04790 and ABID97_RS04795 are separated by 51 nucleotides ABID97_RS04795 and ABID97_RS04800 overlap by 4 nucleotides ABID97_RS04800 and ABID97_RS04805 are separated by 126 nucleotides
ABID97_RS04790: ABID97_RS04790 - YceI family protein, at 999,077 to 999,709
_RS04790
ABID97_RS04795: ABID97_RS04795 - YceI family protein, at 999,761 to 1,000,339
_RS04795
ABID97_RS04800: ABID97_RS04800 - cytochrome b/b6 domain-containing protein, at 1,000,336 to 1,000,914
_RS04800
ABID97_RS04805: ABID97_RS04805 - ATP-binding protein, at 1,001,041 to 1,002,837
_RS04805
Position (kb) 1000
1001 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 999.535 kb on - strand, within ABID97_RS04790 at 999.549 kb on + strand, within ABID97_RS04790 at 999.549 kb on + strand, within ABID97_RS04790 at 999.549 kb on + strand, within ABID97_RS04790 at 999.549 kb on + strand, within ABID97_RS04790 at 999.550 kb on - strand, within ABID97_RS04790 at 999.582 kb on + strand, within ABID97_RS04790 at 999.582 kb on + strand, within ABID97_RS04790 at 999.582 kb on + strand, within ABID97_RS04790 at 999.583 kb on - strand, within ABID97_RS04790 at 999.583 kb on - strand, within ABID97_RS04790 at 999.583 kb on - strand, within ABID97_RS04790 at 999.583 kb on - strand, within ABID97_RS04790 at 999.639 kb on + strand at 999.640 kb on - strand, within ABID97_RS04790 at 999.858 kb on + strand, within ABID97_RS04795 at 999.858 kb on + strand, within ABID97_RS04795 at 999.858 kb on + strand, within ABID97_RS04795 at 999.859 kb on - strand, within ABID97_RS04795 at 1000.574 kb on + strand, within ABID97_RS04800 at 1000.575 kb on - strand, within ABID97_RS04800 at 1000.575 kb on - strand, within ABID97_RS04800 at 1000.613 kb on + strand, within ABID97_RS04800 at 1000.613 kb on + strand, within ABID97_RS04800 at 1000.613 kb on + strand, within ABID97_RS04800 at 1000.614 kb on - strand, within ABID97_RS04800 at 1000.614 kb on - strand, within ABID97_RS04800 at 1000.767 kb on - strand, within ABID97_RS04800 at 1000.808 kb on + strand, within ABID97_RS04800 at 1000.809 kb on - strand, within ABID97_RS04800 at 1000.809 kb on - strand, within ABID97_RS04800 at 1000.809 kb on - strand, within ABID97_RS04800 at 1000.809 kb on - strand, within ABID97_RS04800 at 1000.880 kb on + strand at 1000.881 kb on - strand at 1000.881 kb on - strand at 1000.986 kb on + strand at 1000.986 kb on + strand at 1000.986 kb on + strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.987 kb on - strand at 1000.988 kb on + strand at 1000.988 kb on + strand at 1000.989 kb on - strand at 1000.989 kb on - strand at 1000.989 kb on - strand at 1001.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 999,535 - ABID97_RS04790 0.72 +1.4 999,549 + ABID97_RS04790 0.75 +0.1 999,549 + ABID97_RS04790 0.75 -0.5 999,549 + ABID97_RS04790 0.75 +0.5 999,549 + ABID97_RS04790 0.75 -0.4 999,550 - ABID97_RS04790 0.75 +0.5 999,582 + ABID97_RS04790 0.80 -0.3 999,582 + ABID97_RS04790 0.80 -0.5 999,582 + ABID97_RS04790 0.80 -1.6 999,583 - ABID97_RS04790 0.80 +0.1 999,583 - ABID97_RS04790 0.80 +0.3 999,583 - ABID97_RS04790 0.80 -0.5 999,583 - ABID97_RS04790 0.80 -0.8 999,639 + +0.6 999,640 - ABID97_RS04790 0.89 -1.2 999,858 + ABID97_RS04795 0.17 -0.7 999,858 + ABID97_RS04795 0.17 -0.7 999,858 + ABID97_RS04795 0.17 -0.6 999,859 - ABID97_RS04795 0.17 -1.9 1,000,574 + ABID97_RS04800 0.41 -1.2 1,000,575 - ABID97_RS04800 0.41 +1.6 1,000,575 - ABID97_RS04800 0.41 -1.2 1,000,613 + ABID97_RS04800 0.48 -1.2 1,000,613 + ABID97_RS04800 0.48 -0.9 1,000,613 + ABID97_RS04800 0.48 +0.1 1,000,614 - ABID97_RS04800 0.48 -0.6 1,000,614 - ABID97_RS04800 0.48 -1.1 1,000,767 - ABID97_RS04800 0.74 -0.1 1,000,808 + ABID97_RS04800 0.82 +0.2 1,000,809 - ABID97_RS04800 0.82 -1.1 1,000,809 - ABID97_RS04800 0.82 -1.1 1,000,809 - ABID97_RS04800 0.82 -0.8 1,000,809 - ABID97_RS04800 0.82 +1.1 1,000,880 + -0.2 1,000,881 - -0.5 1,000,881 - -0.3 1,000,986 + +2.1 1,000,986 + -2.6 1,000,986 + -1.1 1,000,987 - -0.2 1,000,987 - +1.0 1,000,987 - -1.2 1,000,987 - -0.5 1,000,987 - -0.1 1,000,987 - -0.3 1,000,987 - -0.1 1,000,987 - -0.2 1,000,987 - -0.4 1,000,987 - -1.0 1,000,988 + +0.1 1,000,988 + -0.8 1,000,989 - -1.1 1,000,989 - +3.0 1,000,989 - -0.1 1,001,002 + -0.4
Or see this region's nucleotide sequence