Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02765 and ABID97_RS02770 overlap by 20 nucleotides ABID97_RS02770 and ABID97_RS02775 are separated by 20 nucleotides ABID97_RS02775 and ABID97_RS02780 are separated by 210 nucleotides
ABID97_RS02765: ABID97_RS02765 - hypothetical protein, at 563,273 to 563,842
_RS02765
ABID97_RS02770: ABID97_RS02770 - exosortase Q, at 563,823 to 564,752
_RS02770
ABID97_RS02775: ABID97_RS02775 - VIT and VWA domain-containing protein, at 564,773 to 566,848
_RS02775
ABID97_RS02780: ABID97_RS02780 - cell envelope integrity protein CreD, at 567,059 to 568,477
_RS02780
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -1
0
1
2
3 at 564.136 kb on + strand, within ABID97_RS02770 at 564.286 kb on + strand, within ABID97_RS02770 at 564.485 kb on + strand, within ABID97_RS02770 at 565.006 kb on - strand, within ABID97_RS02775 at 565.023 kb on + strand, within ABID97_RS02775 at 565.024 kb on - strand, within ABID97_RS02775 at 565.564 kb on - strand, within ABID97_RS02775 at 565.596 kb on - strand, within ABID97_RS02775 at 565.621 kb on - strand, within ABID97_RS02775 at 565.669 kb on - strand, within ABID97_RS02775 at 565.875 kb on + strand, within ABID97_RS02775 at 565.875 kb on + strand, within ABID97_RS02775 at 565.876 kb on - strand, within ABID97_RS02775 at 565.876 kb on - strand, within ABID97_RS02775 at 565.876 kb on - strand, within ABID97_RS02775 at 565.876 kb on - strand, within ABID97_RS02775 at 565.876 kb on - strand, within ABID97_RS02775 at 565.876 kb on - strand, within ABID97_RS02775 at 565.974 kb on + strand, within ABID97_RS02775 at 565.974 kb on + strand, within ABID97_RS02775 at 565.975 kb on - strand, within ABID97_RS02775 at 565.975 kb on - strand, within ABID97_RS02775 at 565.975 kb on - strand, within ABID97_RS02775 at 565.975 kb on - strand, within ABID97_RS02775 at 565.975 kb on - strand, within ABID97_RS02775 at 566.295 kb on + strand, within ABID97_RS02775 at 566.295 kb on + strand, within ABID97_RS02775 at 566.296 kb on - strand, within ABID97_RS02775 at 566.556 kb on + strand, within ABID97_RS02775 at 566.557 kb on - strand, within ABID97_RS02775 at 566.704 kb on - strand at 567.118 kb on - strand at 567.204 kb on + strand, within ABID97_RS02780 at 567.221 kb on + strand, within ABID97_RS02780 at 567.221 kb on + strand, within ABID97_RS02780 at 567.222 kb on - strand, within ABID97_RS02780 at 567.222 kb on - strand, within ABID97_RS02780 at 567.222 kb on - strand, within ABID97_RS02780 at 567.266 kb on + strand, within ABID97_RS02780 at 567.267 kb on - strand, within ABID97_RS02780 at 567.431 kb on + strand, within ABID97_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 564,136 + ABID97_RS02770 0.34 -0.4 564,286 + ABID97_RS02770 0.50 -0.6 564,485 + ABID97_RS02770 0.71 +0.8 565,006 - ABID97_RS02775 0.11 +1.8 565,023 + ABID97_RS02775 0.12 +1.2 565,024 - ABID97_RS02775 0.12 +0.2 565,564 - ABID97_RS02775 0.38 +0.8 565,596 - ABID97_RS02775 0.40 +1.4 565,621 - ABID97_RS02775 0.41 +1.3 565,669 - ABID97_RS02775 0.43 -0.7 565,875 + ABID97_RS02775 0.53 +0.9 565,875 + ABID97_RS02775 0.53 +1.5 565,876 - ABID97_RS02775 0.53 +0.6 565,876 - ABID97_RS02775 0.53 +1.7 565,876 - ABID97_RS02775 0.53 +0.7 565,876 - ABID97_RS02775 0.53 +1.2 565,876 - ABID97_RS02775 0.53 -0.1 565,876 - ABID97_RS02775 0.53 +0.1 565,974 + ABID97_RS02775 0.58 +0.0 565,974 + ABID97_RS02775 0.58 +1.1 565,975 - ABID97_RS02775 0.58 +3.1 565,975 - ABID97_RS02775 0.58 +1.5 565,975 - ABID97_RS02775 0.58 +0.7 565,975 - ABID97_RS02775 0.58 +0.3 565,975 - ABID97_RS02775 0.58 +1.0 566,295 + ABID97_RS02775 0.73 +1.1 566,295 + ABID97_RS02775 0.73 +0.2 566,296 - ABID97_RS02775 0.73 +1.3 566,556 + ABID97_RS02775 0.86 +0.2 566,557 - ABID97_RS02775 0.86 +1.6 566,704 - -1.5 567,118 - +2.5 567,204 + ABID97_RS02780 0.10 +0.9 567,221 + ABID97_RS02780 0.11 +1.4 567,221 + ABID97_RS02780 0.11 -0.1 567,222 - ABID97_RS02780 0.11 +1.3 567,222 - ABID97_RS02780 0.11 +1.6 567,222 - ABID97_RS02780 0.11 +2.1 567,266 + ABID97_RS02780 0.15 +2.1 567,267 - ABID97_RS02780 0.15 +0.3 567,431 + ABID97_RS02780 0.26 +0.4
Or see this region's nucleotide sequence