Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02135 and ABID97_RS02140 are separated by 37 nucleotides ABID97_RS02140 and ABID97_RS02145 are separated by 5 nucleotides ABID97_RS02145 and ABID97_RS02150 are separated by 7 nucleotides ABID97_RS02150 and ABID97_RS02155 are separated by 44 nucleotides
ABID97_RS02135: ABID97_RS02135 - GspH/FimT family pseudopilin, at 430,906 to 431,481
_RS02135
ABID97_RS02140: ABID97_RS02140 - sugar transferase, at 431,519 to 432,115
_RS02140
ABID97_RS02145: ABID97_RS02145 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 432,121 to 433,284
_RS02145
ABID97_RS02150: ABID97_RS02150 - class I SAM-dependent methyltransferase, at 433,292 to 433,972
_RS02150
ABID97_RS02155: ABID97_RS02155 - glycosyltransferase family 4 protein, at 434,017 to 435,243
_RS02155
Position (kb) 432
433
434 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 431.165 kb on + strand, within ABID97_RS02135 at 431.165 kb on + strand, within ABID97_RS02135 at 431.236 kb on + strand, within ABID97_RS02135 at 431.236 kb on + strand, within ABID97_RS02135 at 431.237 kb on - strand, within ABID97_RS02135 at 431.281 kb on + strand, within ABID97_RS02135 at 431.479 kb on + strand at 431.480 kb on - strand at 431.545 kb on + strand at 431.545 kb on + strand at 431.546 kb on - strand at 431.546 kb on - strand at 431.550 kb on - strand at 431.592 kb on + strand, within ABID97_RS02140 at 431.592 kb on + strand, within ABID97_RS02140 at 431.592 kb on + strand, within ABID97_RS02140 at 431.593 kb on - strand, within ABID97_RS02140 at 431.593 kb on - strand, within ABID97_RS02140 at 431.593 kb on - strand, within ABID97_RS02140 at 431.755 kb on + strand, within ABID97_RS02140 at 431.755 kb on + strand, within ABID97_RS02140 at 431.756 kb on - strand, within ABID97_RS02140 at 431.756 kb on - strand, within ABID97_RS02140 at 432.131 kb on - strand at 432.270 kb on - strand, within ABID97_RS02145 at 432.293 kb on + strand, within ABID97_RS02145 at 432.384 kb on - strand, within ABID97_RS02145 at 432.384 kb on - strand, within ABID97_RS02145 at 432.582 kb on - strand, within ABID97_RS02145 at 432.582 kb on - strand, within ABID97_RS02145 at 432.584 kb on + strand, within ABID97_RS02145 at 432.585 kb on - strand, within ABID97_RS02145 at 432.882 kb on - strand, within ABID97_RS02145 at 433.519 kb on - strand, within ABID97_RS02150 at 433.519 kb on - strand, within ABID97_RS02150 at 433.698 kb on - strand, within ABID97_RS02150 at 433.924 kb on - strand at 433.960 kb on - strand at 433.960 kb on - strand at 434.078 kb on + strand at 434.079 kb on - strand at 434.079 kb on - strand at 434.134 kb on + strand at 434.259 kb on - strand, within ABID97_RS02155 at 434.259 kb on - strand, within ABID97_RS02155
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 431,165 + ABID97_RS02135 0.45 +6.6 431,165 + ABID97_RS02135 0.45 +7.2 431,236 + ABID97_RS02135 0.57 +6.7 431,236 + ABID97_RS02135 0.57 +6.4 431,237 - ABID97_RS02135 0.57 +5.7 431,281 + ABID97_RS02135 0.65 +6.8 431,479 + -0.8 431,480 - +0.7 431,545 + +3.4 431,545 + +2.3 431,546 - +2.7 431,546 - +2.4 431,550 - +4.6 431,592 + ABID97_RS02140 0.12 +4.6 431,592 + ABID97_RS02140 0.12 +2.6 431,592 + ABID97_RS02140 0.12 +2.5 431,593 - ABID97_RS02140 0.12 +3.1 431,593 - ABID97_RS02140 0.12 +2.3 431,593 - ABID97_RS02140 0.12 +3.2 431,755 + ABID97_RS02140 0.40 +3.3 431,755 + ABID97_RS02140 0.40 +2.5 431,756 - ABID97_RS02140 0.40 +2.8 431,756 - ABID97_RS02140 0.40 +3.0 432,131 - -0.2 432,270 - ABID97_RS02145 0.13 +3.9 432,293 + ABID97_RS02145 0.15 +3.7 432,384 - ABID97_RS02145 0.23 +5.0 432,384 - ABID97_RS02145 0.23 +4.0 432,582 - ABID97_RS02145 0.40 +4.1 432,582 - ABID97_RS02145 0.40 +4.2 432,584 + ABID97_RS02145 0.40 +4.1 432,585 - ABID97_RS02145 0.40 +3.6 432,882 - ABID97_RS02145 0.65 +3.9 433,519 - ABID97_RS02150 0.33 +6.6 433,519 - ABID97_RS02150 0.33 +6.4 433,698 - ABID97_RS02150 0.60 +6.0 433,924 - +6.8 433,960 - +5.5 433,960 - +6.2 434,078 + +6.0 434,079 - +6.3 434,079 - +5.6 434,134 + +5.1 434,259 - ABID97_RS02155 0.20 +5.2 434,259 - ABID97_RS02155 0.20 +5.4
Or see this region's nucleotide sequence