Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00825 and ABID97_RS00830 are separated by 134 nucleotides ABID97_RS00830 and ABID97_RS00835 are separated by 63 nucleotides ABID97_RS00835 and ABID97_RS00840 are separated by 220 nucleotides
ABID97_RS00825: ABID97_RS00825 - type III pantothenate kinase, at 163,859 to 164,629
_RS00825
ABID97_RS00830: ABID97_RS00830 - peptidoglycan-binding protein LysM, at 164,764 to 165,225
_RS00830
ABID97_RS00835: ABID97_RS00835 - rhodanese-like domain-containing protein, at 165,289 to 165,702
_RS00835
ABID97_RS00840: ABID97_RS00840 - TRAP transporter substrate-binding protein, at 165,923 to 167,038
_RS00840
Position (kb) 165
166 Strain fitness (log2 ratio) -1
0
1
2
3 at 164.640 kb on - strand at 164.722 kb on + strand at 164.722 kb on + strand at 164.753 kb on - strand at 164.875 kb on + strand, within ABID97_RS00830 at 164.875 kb on + strand, within ABID97_RS00830 at 164.876 kb on - strand, within ABID97_RS00830 at 164.920 kb on + strand, within ABID97_RS00830 at 164.920 kb on + strand, within ABID97_RS00830 at 164.920 kb on + strand, within ABID97_RS00830 at 165.067 kb on + strand, within ABID97_RS00830 at 165.068 kb on - strand, within ABID97_RS00830 at 165.068 kb on - strand, within ABID97_RS00830 at 165.116 kb on - strand, within ABID97_RS00830 at 165.116 kb on - strand, within ABID97_RS00830 at 165.136 kb on + strand, within ABID97_RS00830 at 165.137 kb on - strand, within ABID97_RS00830 at 165.191 kb on - strand at 165.389 kb on + strand, within ABID97_RS00835 at 165.389 kb on + strand, within ABID97_RS00835 at 165.390 kb on - strand, within ABID97_RS00835 at 165.675 kb on - strand at 165.703 kb on - strand at 165.866 kb on - strand at 165.907 kb on + strand at 165.908 kb on - strand at 166.224 kb on - strand, within ABID97_RS00840 at 166.313 kb on + strand, within ABID97_RS00840 at 166.314 kb on - strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.347 kb on - strand, within ABID97_RS00840 at 166.376 kb on + strand, within ABID97_RS00840 at 166.377 kb on - strand, within ABID97_RS00840 at 166.383 kb on - strand, within ABID97_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 164,640 - -1.4 164,722 + -0.7 164,722 + -1.3 164,753 - +0.0 164,875 + ABID97_RS00830 0.24 -0.5 164,875 + ABID97_RS00830 0.24 -0.5 164,876 - ABID97_RS00830 0.24 -1.0 164,920 + ABID97_RS00830 0.34 -0.7 164,920 + ABID97_RS00830 0.34 -0.1 164,920 + ABID97_RS00830 0.34 +0.7 165,067 + ABID97_RS00830 0.66 -0.9 165,068 - ABID97_RS00830 0.66 +1.3 165,068 - ABID97_RS00830 0.66 +3.1 165,116 - ABID97_RS00830 0.76 +0.0 165,116 - ABID97_RS00830 0.76 -0.0 165,136 + ABID97_RS00830 0.81 +0.1 165,137 - ABID97_RS00830 0.81 -1.0 165,191 - -1.2 165,389 + ABID97_RS00835 0.24 +1.1 165,389 + ABID97_RS00835 0.24 -0.2 165,390 - ABID97_RS00835 0.24 -1.3 165,675 - +0.7 165,703 - -0.7 165,866 - +0.2 165,907 + +0.4 165,908 - +0.0 166,224 - ABID97_RS00840 0.27 +1.1 166,313 + ABID97_RS00840 0.35 -0.0 166,314 - ABID97_RS00840 0.35 +0.1 166,346 + ABID97_RS00840 0.38 -0.8 166,346 + ABID97_RS00840 0.38 -1.3 166,346 + ABID97_RS00840 0.38 +1.5 166,347 - ABID97_RS00840 0.38 -0.6 166,376 + ABID97_RS00840 0.41 +2.1 166,377 - ABID97_RS00840 0.41 -0.7 166,383 - ABID97_RS00840 0.41 +0.2
Or see this region's nucleotide sequence