Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00430 and ABID97_RS00435 overlap by 38 nucleotides ABID97_RS00435 and ABID97_RS00440 overlap by 4 nucleotides
ABID97_RS00430: ABID97_RS00430 - ABC transporter permease, at 96,167 to 97,192
_RS00430
ABID97_RS00435: ABID97_RS00435 - sugar ABC transporter ATP-binding protein, at 97,155 to 98,693
_RS00435
ABID97_RS00440: ABID97_RS00440 - ROK family protein, at 98,690 to 99,859
_RS00440
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 96.234 kb on + strand at 96.234 kb on + strand at 96.235 kb on - strand at 96.423 kb on + strand, within ABID97_RS00430 at 96.423 kb on + strand, within ABID97_RS00430 at 96.423 kb on + strand, within ABID97_RS00430 at 96.465 kb on + strand, within ABID97_RS00430 at 96.465 kb on + strand, within ABID97_RS00430 at 96.465 kb on + strand, within ABID97_RS00430 at 96.466 kb on - strand, within ABID97_RS00430 at 96.466 kb on - strand, within ABID97_RS00430 at 96.543 kb on + strand, within ABID97_RS00430 at 96.543 kb on + strand, within ABID97_RS00430 at 96.639 kb on + strand, within ABID97_RS00430 at 96.640 kb on - strand, within ABID97_RS00430 at 96.643 kb on - strand, within ABID97_RS00430 at 96.654 kb on + strand, within ABID97_RS00430 at 96.705 kb on + strand, within ABID97_RS00430 at 96.705 kb on + strand, within ABID97_RS00430 at 96.705 kb on + strand, within ABID97_RS00430 at 96.706 kb on - strand, within ABID97_RS00430 at 96.714 kb on + strand, within ABID97_RS00430 at 96.714 kb on + strand, within ABID97_RS00430 at 96.715 kb on - strand, within ABID97_RS00430 at 97.357 kb on + strand, within ABID97_RS00435 at 97.358 kb on - strand, within ABID97_RS00435 at 97.358 kb on - strand, within ABID97_RS00435 at 97.358 kb on - strand, within ABID97_RS00435 at 97.358 kb on - strand, within ABID97_RS00435 at 97.516 kb on + strand, within ABID97_RS00435 at 97.517 kb on - strand, within ABID97_RS00435 at 97.663 kb on + strand, within ABID97_RS00435 at 97.663 kb on + strand, within ABID97_RS00435 at 97.663 kb on + strand, within ABID97_RS00435 at 97.663 kb on + strand, within ABID97_RS00435 at 97.663 kb on + strand, within ABID97_RS00435 at 97.664 kb on - strand, within ABID97_RS00435 at 97.664 kb on - strand, within ABID97_RS00435 at 97.664 kb on - strand, within ABID97_RS00435 at 97.664 kb on - strand, within ABID97_RS00435 at 97.664 kb on - strand, within ABID97_RS00435 at 97.664 kb on - strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.087 kb on - strand, within ABID97_RS00435 at 98.087 kb on - strand, within ABID97_RS00435 at 98.573 kb on - strand at 98.778 kb on + strand at 98.779 kb on - strand at 98.824 kb on - strand, within ABID97_RS00440 at 99.213 kb on + strand, within ABID97_RS00440 at 99.213 kb on + strand, within ABID97_RS00440 at 99.214 kb on - strand, within ABID97_RS00440 at 99.214 kb on - strand, within ABID97_RS00440 at 99.373 kb on - strand, within ABID97_RS00440
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 96,234 + -1.5 96,234 + -1.3 96,235 - +0.9 96,423 + ABID97_RS00430 0.25 -0.8 96,423 + ABID97_RS00430 0.25 +0.3 96,423 + ABID97_RS00430 0.25 -0.9 96,465 + ABID97_RS00430 0.29 -0.4 96,465 + ABID97_RS00430 0.29 +0.8 96,465 + ABID97_RS00430 0.29 +0.2 96,466 - ABID97_RS00430 0.29 -0.5 96,466 - ABID97_RS00430 0.29 -2.3 96,543 + ABID97_RS00430 0.37 +1.9 96,543 + ABID97_RS00430 0.37 -0.9 96,639 + ABID97_RS00430 0.46 +0.4 96,640 - ABID97_RS00430 0.46 +2.1 96,643 - ABID97_RS00430 0.46 -0.8 96,654 + ABID97_RS00430 0.47 -0.7 96,705 + ABID97_RS00430 0.52 -0.7 96,705 + ABID97_RS00430 0.52 +0.5 96,705 + ABID97_RS00430 0.52 -0.5 96,706 - ABID97_RS00430 0.53 -0.0 96,714 + ABID97_RS00430 0.53 +0.0 96,714 + ABID97_RS00430 0.53 -0.6 96,715 - ABID97_RS00430 0.53 +0.1 97,357 + ABID97_RS00435 0.13 -0.3 97,358 - ABID97_RS00435 0.13 +0.2 97,358 - ABID97_RS00435 0.13 +1.1 97,358 - ABID97_RS00435 0.13 +0.5 97,358 - ABID97_RS00435 0.13 +0.4 97,516 + ABID97_RS00435 0.23 -0.6 97,517 - ABID97_RS00435 0.24 -0.3 97,663 + ABID97_RS00435 0.33 +0.6 97,663 + ABID97_RS00435 0.33 +0.8 97,663 + ABID97_RS00435 0.33 -0.1 97,663 + ABID97_RS00435 0.33 +0.3 97,663 + ABID97_RS00435 0.33 -0.9 97,664 - ABID97_RS00435 0.33 +0.3 97,664 - ABID97_RS00435 0.33 -1.3 97,664 - ABID97_RS00435 0.33 +1.5 97,664 - ABID97_RS00435 0.33 -0.7 97,664 - ABID97_RS00435 0.33 +0.3 97,664 - ABID97_RS00435 0.33 +2.3 98,086 + ABID97_RS00435 0.60 +0.7 98,086 + ABID97_RS00435 0.60 -1.1 98,086 + ABID97_RS00435 0.60 +0.2 98,086 + ABID97_RS00435 0.60 -1.3 98,087 - ABID97_RS00435 0.61 -1.0 98,087 - ABID97_RS00435 0.61 +1.2 98,573 - -0.9 98,778 + -1.5 98,779 - +0.1 98,824 - ABID97_RS00440 0.11 +0.7 99,213 + ABID97_RS00440 0.45 -0.3 99,213 + ABID97_RS00440 0.45 +3.8 99,214 - ABID97_RS00440 0.45 -0.7 99,214 - ABID97_RS00440 0.45 +4.1 99,373 - ABID97_RS00440 0.58 +1.0
Or see this region's nucleotide sequence