Experiment: phage_S63 5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00320 and ABID97_RS00325 are separated by 16 nucleotides ABID97_RS00325 and ABID97_RS00330 overlap by 4 nucleotides
ABID97_RS00320: ABID97_RS00320 - efflux RND transporter periplasmic adaptor subunit, at 71,397 to 72,686
_RS00320
ABID97_RS00325: ABID97_RS00325 - efflux RND transporter permease subunit, at 72,703 to 75,864
_RS00325
ABID97_RS00330: ABID97_RS00330 - efflux transporter outer membrane subunit, at 75,861 to 77,285
_RS00330
Position (kb) 72
73
74
75
76 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 71.820 kb on + strand, within ABID97_RS00320 at 71.820 kb on + strand, within ABID97_RS00320 at 71.821 kb on - strand, within ABID97_RS00320 at 71.821 kb on - strand, within ABID97_RS00320 at 71.952 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.072 kb on + strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.073 kb on - strand, within ABID97_RS00320 at 72.138 kb on + strand, within ABID97_RS00320 at 72.139 kb on - strand, within ABID97_RS00320 at 72.139 kb on - strand, within ABID97_RS00320 at 72.201 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.315 kb on + strand, within ABID97_RS00320 at 72.316 kb on - strand, within ABID97_RS00320 at 72.316 kb on - strand, within ABID97_RS00320 at 72.316 kb on - strand, within ABID97_RS00320 at 72.684 kb on + strand at 72.684 kb on + strand at 72.684 kb on + strand at 72.685 kb on - strand at 72.685 kb on - strand at 72.848 kb on - strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.931 kb on + strand at 72.932 kb on - strand at 72.932 kb on - strand at 73.288 kb on + strand, within ABID97_RS00325 at 73.289 kb on - strand, within ABID97_RS00325 at 73.289 kb on - strand, within ABID97_RS00325 at 73.464 kb on + strand, within ABID97_RS00325 at 73.465 kb on - strand, within ABID97_RS00325 at 73.525 kb on + strand, within ABID97_RS00325 at 74.101 kb on + strand, within ABID97_RS00325 at 74.101 kb on + strand, within ABID97_RS00325 at 74.102 kb on - strand, within ABID97_RS00325 at 74.102 kb on - strand, within ABID97_RS00325 at 74.332 kb on + strand, within ABID97_RS00325 at 74.332 kb on + strand, within ABID97_RS00325 at 74.333 kb on - strand, within ABID97_RS00325 at 74.365 kb on + strand, within ABID97_RS00325 at 74.365 kb on + strand, within ABID97_RS00325 at 74.365 kb on + strand, within ABID97_RS00325 at 74.366 kb on - strand, within ABID97_RS00325 at 74.528 kb on + strand, within ABID97_RS00325 at 74.529 kb on - strand, within ABID97_RS00325 at 74.529 kb on - strand, within ABID97_RS00325 at 74.683 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.962 kb on + strand, within ABID97_RS00325 at 74.963 kb on - strand, within ABID97_RS00325 at 75.145 kb on + strand, within ABID97_RS00325 at 75.364 kb on + strand, within ABID97_RS00325 at 75.365 kb on - strand at 75.452 kb on - strand, within ABID97_RS00325 at 75.466 kb on + strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.467 kb on - strand, within ABID97_RS00325 at 75.929 kb on + strand at 75.929 kb on + strand at 75.930 kb on - strand at 75.930 kb on - strand at 75.933 kb on + strand at 75.933 kb on + strand at 76.203 kb on + strand, within ABID97_RS00330 at 76.204 kb on - strand, within ABID97_RS00330 at 76.204 kb on - strand, within ABID97_RS00330 at 76.245 kb on + strand, within ABID97_RS00330 at 76.246 kb on - strand, within ABID97_RS00330 at 76.246 kb on - strand, within ABID97_RS00330 at 76.246 kb on - strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.329 kb on + strand, within ABID97_RS00330 at 76.330 kb on - strand, within ABID97_RS00330 at 76.560 kb on + strand, within ABID97_RS00330 at 76.561 kb on - strand, within ABID97_RS00330 at 76.561 kb on - strand, within ABID97_RS00330
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 5 MOI remove 71,820 + ABID97_RS00320 0.33 -0.1 71,820 + ABID97_RS00320 0.33 +0.6 71,821 - ABID97_RS00320 0.33 -0.8 71,821 - ABID97_RS00320 0.33 -0.1 71,952 + ABID97_RS00320 0.43 +1.5 72,072 + ABID97_RS00320 0.52 +1.1 72,072 + ABID97_RS00320 0.52 -0.4 72,072 + ABID97_RS00320 0.52 -0.4 72,072 + ABID97_RS00320 0.52 +0.9 72,072 + ABID97_RS00320 0.52 -0.0 72,072 + ABID97_RS00320 0.52 +0.4 72,072 + ABID97_RS00320 0.52 +1.3 72,072 + ABID97_RS00320 0.52 +0.2 72,072 + ABID97_RS00320 0.52 -0.0 72,073 - ABID97_RS00320 0.52 +0.9 72,073 - ABID97_RS00320 0.52 +0.1 72,073 - ABID97_RS00320 0.52 +2.1 72,073 - ABID97_RS00320 0.52 -0.2 72,073 - ABID97_RS00320 0.52 +2.0 72,073 - ABID97_RS00320 0.52 -0.7 72,073 - ABID97_RS00320 0.52 -0.3 72,073 - ABID97_RS00320 0.52 +3.1 72,073 - ABID97_RS00320 0.52 -1.1 72,073 - ABID97_RS00320 0.52 +1.0 72,073 - ABID97_RS00320 0.52 +1.0 72,073 - ABID97_RS00320 0.52 +0.6 72,073 - ABID97_RS00320 0.52 +0.3 72,138 + ABID97_RS00320 0.57 +0.7 72,139 - ABID97_RS00320 0.58 -0.7 72,139 - ABID97_RS00320 0.58 +0.5 72,201 + ABID97_RS00320 0.62 +2.0 72,315 + ABID97_RS00320 0.71 -0.4 72,315 + ABID97_RS00320 0.71 +0.1 72,315 + ABID97_RS00320 0.71 -0.3 72,315 + ABID97_RS00320 0.71 -0.0 72,315 + ABID97_RS00320 0.71 +0.0 72,316 - ABID97_RS00320 0.71 +0.0 72,316 - ABID97_RS00320 0.71 +0.5 72,316 - ABID97_RS00320 0.71 -0.2 72,684 + +0.1 72,684 + -0.1 72,684 + +1.2 72,685 - +0.4 72,685 - -0.2 72,848 - -0.3 72,931 + -0.5 72,931 + +1.7 72,931 + -0.3 72,931 + -1.2 72,931 + -0.7 72,931 + +0.5 72,931 + +2.1 72,932 - +0.5 72,932 - +2.4 73,288 + ABID97_RS00325 0.19 +0.4 73,289 - ABID97_RS00325 0.19 -1.1 73,289 - ABID97_RS00325 0.19 -0.9 73,464 + ABID97_RS00325 0.24 -0.3 73,465 - ABID97_RS00325 0.24 +2.5 73,525 + ABID97_RS00325 0.26 +0.1 74,101 + ABID97_RS00325 0.44 -0.2 74,101 + ABID97_RS00325 0.44 +0.3 74,102 - ABID97_RS00325 0.44 +0.8 74,102 - ABID97_RS00325 0.44 +0.2 74,332 + ABID97_RS00325 0.52 -0.7 74,332 + ABID97_RS00325 0.52 +3.6 74,333 - ABID97_RS00325 0.52 -0.4 74,365 + ABID97_RS00325 0.53 +0.8 74,365 + ABID97_RS00325 0.53 +3.1 74,365 + ABID97_RS00325 0.53 +0.1 74,366 - ABID97_RS00325 0.53 -0.1 74,528 + ABID97_RS00325 0.58 +3.1 74,529 - ABID97_RS00325 0.58 +0.0 74,529 - ABID97_RS00325 0.58 +1.1 74,683 + ABID97_RS00325 0.63 -1.9 74,962 + ABID97_RS00325 0.71 +0.9 74,962 + ABID97_RS00325 0.71 -0.3 74,962 + ABID97_RS00325 0.71 +1.5 74,962 + ABID97_RS00325 0.71 -1.6 74,963 - ABID97_RS00325 0.71 -1.6 75,145 + ABID97_RS00325 0.77 -0.2 75,364 + ABID97_RS00325 0.84 -0.8 75,365 - +0.5 75,452 - ABID97_RS00325 0.87 -0.3 75,466 + ABID97_RS00325 0.87 +0.6 75,467 - ABID97_RS00325 0.87 +0.0 75,467 - ABID97_RS00325 0.87 +0.3 75,467 - ABID97_RS00325 0.87 -0.2 75,467 - ABID97_RS00325 0.87 +1.0 75,929 + -0.2 75,929 + +0.8 75,930 - -0.4 75,930 - +2.1 75,933 + -0.7 75,933 + +0.7 76,203 + ABID97_RS00330 0.24 -0.7 76,204 - ABID97_RS00330 0.24 -0.9 76,204 - ABID97_RS00330 0.24 -1.6 76,245 + ABID97_RS00330 0.27 -0.4 76,246 - ABID97_RS00330 0.27 -0.4 76,246 - ABID97_RS00330 0.27 +1.5 76,246 - ABID97_RS00330 0.27 +0.4 76,329 + ABID97_RS00330 0.33 +1.5 76,329 + ABID97_RS00330 0.33 -0.1 76,329 + ABID97_RS00330 0.33 -0.8 76,329 + ABID97_RS00330 0.33 -0.2 76,329 + ABID97_RS00330 0.33 -1.0 76,330 - ABID97_RS00330 0.33 +0.4 76,560 + ABID97_RS00330 0.49 -0.2 76,561 - ABID97_RS00330 0.49 +0.9 76,561 - ABID97_RS00330 0.49 +0.8
Or see this region's nucleotide sequence