Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24830 and ABID97_RS24835 are separated by 16 nucleotides ABID97_RS24835 and ABID97_RS24840 overlap by 4 nucleotides
ABID97_RS24830: ABID97_RS24830 - cytochrome c, at 5,145,866 to 5,146,804
_RS24830
ABID97_RS24835: ABID97_RS24835 - DNA oxidative demethylase AlkB, at 5,146,821 to 5,147,480
_RS24835
ABID97_RS24840: ABID97_RS24840 - PLP-dependent aminotransferase family protein, at 5,147,477 to 5,148,937
_RS24840
Position (kb) 5146
5147
5148 Strain fitness (log2 ratio) -1
0
1
2 at 5146.088 kb on + strand, within ABID97_RS24830 at 5146.088 kb on + strand, within ABID97_RS24830 at 5146.088 kb on + strand, within ABID97_RS24830 at 5146.088 kb on + strand, within ABID97_RS24830 at 5146.088 kb on + strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.089 kb on - strand, within ABID97_RS24830 at 5146.301 kb on + strand, within ABID97_RS24830 at 5146.301 kb on + strand, within ABID97_RS24830 at 5146.301 kb on + strand, within ABID97_RS24830 at 5146.302 kb on - strand, within ABID97_RS24830 at 5146.302 kb on - strand, within ABID97_RS24830 at 5146.302 kb on - strand, within ABID97_RS24830 at 5146.302 kb on - strand, within ABID97_RS24830 at 5146.302 kb on - strand, within ABID97_RS24830 at 5146.343 kb on + strand at 5146.343 kb on + strand, within ABID97_RS24830 at 5146.416 kb on - strand, within ABID97_RS24830 at 5146.514 kb on + strand, within ABID97_RS24830 at 5146.515 kb on - strand, within ABID97_RS24830 at 5146.515 kb on - strand, within ABID97_RS24830 at 5146.640 kb on + strand, within ABID97_RS24830 at 5146.769 kb on + strand at 5146.770 kb on - strand at 5147.026 kb on - strand, within ABID97_RS24835 at 5147.047 kb on + strand, within ABID97_RS24835 at 5147.098 kb on + strand, within ABID97_RS24835 at 5147.099 kb on - strand, within ABID97_RS24835 at 5147.592 kb on + strand at 5147.592 kb on + strand at 5147.592 kb on + strand at 5147.593 kb on - strand at 5147.730 kb on + strand, within ABID97_RS24840 at 5147.730 kb on + strand, within ABID97_RS24840 at 5147.866 kb on - strand, within ABID97_RS24840 at 5147.866 kb on - strand, within ABID97_RS24840 at 5147.866 kb on - strand, within ABID97_RS24840 at 5148.069 kb on + strand, within ABID97_RS24840 at 5148.069 kb on + strand, within ABID97_RS24840 at 5148.070 kb on - strand, within ABID97_RS24840 at 5148.082 kb on - strand, within ABID97_RS24840 at 5148.321 kb on + strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.453 kb on + strand, within ABID97_RS24840 at 5148.453 kb on + strand, within ABID97_RS24840
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 5,146,088 + ABID97_RS24830 0.24 +0.1 5,146,088 + ABID97_RS24830 0.24 +1.7 5,146,088 + ABID97_RS24830 0.24 -0.4 5,146,088 + ABID97_RS24830 0.24 -0.8 5,146,088 + ABID97_RS24830 0.24 +0.0 5,146,089 - ABID97_RS24830 0.24 +1.1 5,146,089 - ABID97_RS24830 0.24 +0.4 5,146,089 - ABID97_RS24830 0.24 -0.2 5,146,089 - ABID97_RS24830 0.24 +1.6 5,146,089 - ABID97_RS24830 0.24 -0.3 5,146,089 - ABID97_RS24830 0.24 -0.2 5,146,089 - ABID97_RS24830 0.24 -0.4 5,146,301 + ABID97_RS24830 0.46 +1.6 5,146,301 + ABID97_RS24830 0.46 +0.3 5,146,301 + ABID97_RS24830 0.46 +0.3 5,146,302 - ABID97_RS24830 0.46 -0.4 5,146,302 - ABID97_RS24830 0.46 -0.4 5,146,302 - ABID97_RS24830 0.46 +0.2 5,146,302 - ABID97_RS24830 0.46 -1.1 5,146,302 - ABID97_RS24830 0.46 +0.8 5,146,343 + +0.6 5,146,343 + ABID97_RS24830 0.51 +1.1 5,146,416 - ABID97_RS24830 0.59 +0.0 5,146,514 + ABID97_RS24830 0.69 +0.1 5,146,515 - ABID97_RS24830 0.69 +0.0 5,146,515 - ABID97_RS24830 0.69 +0.1 5,146,640 + ABID97_RS24830 0.82 +0.1 5,146,769 + -0.5 5,146,770 - -0.7 5,147,026 - ABID97_RS24835 0.31 +0.2 5,147,047 + ABID97_RS24835 0.34 -0.2 5,147,098 + ABID97_RS24835 0.42 +2.6 5,147,099 - ABID97_RS24835 0.42 +1.0 5,147,592 + +0.2 5,147,592 + -0.4 5,147,592 + +0.1 5,147,593 - +0.3 5,147,730 + ABID97_RS24840 0.17 -0.8 5,147,730 + ABID97_RS24840 0.17 -0.3 5,147,866 - ABID97_RS24840 0.27 +0.8 5,147,866 - ABID97_RS24840 0.27 +0.1 5,147,866 - ABID97_RS24840 0.27 +0.8 5,148,069 + ABID97_RS24840 0.41 -0.3 5,148,069 + ABID97_RS24840 0.41 -0.2 5,148,070 - ABID97_RS24840 0.41 -0.0 5,148,082 - ABID97_RS24840 0.41 -0.1 5,148,321 + ABID97_RS24840 0.58 -0.3 5,148,322 - ABID97_RS24840 0.58 +0.3 5,148,322 - ABID97_RS24840 0.58 +0.2 5,148,322 - ABID97_RS24840 0.58 -0.1 5,148,322 - ABID97_RS24840 0.58 -0.3 5,148,322 - ABID97_RS24840 0.58 -0.6 5,148,453 + ABID97_RS24840 0.67 -0.1 5,148,453 + ABID97_RS24840 0.67 +0.4
Or see this region's nucleotide sequence