Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23015

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23010 and ABID97_RS23015 overlap by 1 nucleotidesABID97_RS23015 and ABID97_RS23020 are separated by 10 nucleotides ABID97_RS23010: ABID97_RS23010 - hypothetical protein, at 4,761,950 to 4,763,230 _RS23010 ABID97_RS23015: ABID97_RS23015 - glycosyltransferase family 4 protein, at 4,763,230 to 4,764,297 _RS23015 ABID97_RS23020: ABID97_RS23020 - polysaccharide pyruvyl transferase family protein, at 4,764,308 to 4,765,456 _RS23020 Position (kb) 4763 4764 4765Strain fitness (log2 ratio) -2 -1 0 1 2at 4762.327 kb on - strand, within ABID97_RS23010at 4762.327 kb on - strand, within ABID97_RS23010at 4762.337 kb on + strand, within ABID97_RS23010at 4762.337 kb on + strand, within ABID97_RS23010at 4762.338 kb on - strand, within ABID97_RS23010at 4762.338 kb on - strand, within ABID97_RS23010at 4762.338 kb on - strand, within ABID97_RS23010at 4762.500 kb on + strand, within ABID97_RS23010at 4762.607 kb on + strand, within ABID97_RS23010at 4762.608 kb on - strand, within ABID97_RS23010at 4763.095 kb on - strand, within ABID97_RS23010at 4763.216 kb on - strandat 4763.249 kb on + strandat 4763.249 kb on + strandat 4763.249 kb on + strandat 4763.250 kb on - strandat 4763.250 kb on - strandat 4763.250 kb on - strandat 4763.288 kb on + strandat 4763.288 kb on + strandat 4763.289 kb on - strandat 4763.289 kb on - strandat 4763.544 kb on - strand, within ABID97_RS23015at 4763.673 kb on - strand, within ABID97_RS23015at 4763.673 kb on - strand, within ABID97_RS23015at 4763.673 kb on - strand, within ABID97_RS23015at 4763.915 kb on + strand, within ABID97_RS23015at 4763.972 kb on + strand, within ABID97_RS23015at 4763.972 kb on + strand, within ABID97_RS23015at 4763.972 kb on + strand, within ABID97_RS23015at 4763.972 kb on + strand, within ABID97_RS23015at 4763.972 kb on + strand, within ABID97_RS23015at 4763.973 kb on - strand, within ABID97_RS23015at 4764.092 kb on - strand, within ABID97_RS23015at 4764.092 kb on - strand, within ABID97_RS23015at 4764.248 kb on + strandat 4764.249 kb on - strandat 4764.249 kb on - strandat 4764.249 kb on - strandat 4764.289 kb on + strandat 4764.290 kb on - strandat 4764.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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4,762,327 - ABID97_RS23010 0.29 +0.1
4,762,327 - ABID97_RS23010 0.29 +0.1
4,762,337 + ABID97_RS23010 0.30 -0.3
4,762,337 + ABID97_RS23010 0.30 -0.1
4,762,338 - ABID97_RS23010 0.30 +0.7
4,762,338 - ABID97_RS23010 0.30 -0.1
4,762,338 - ABID97_RS23010 0.30 -0.2
4,762,500 + ABID97_RS23010 0.43 -0.3
4,762,607 + ABID97_RS23010 0.51 -1.6
4,762,608 - ABID97_RS23010 0.51 +1.7
4,763,095 - ABID97_RS23010 0.89 +0.2
4,763,216 - -0.4
4,763,249 + +1.7
4,763,249 + +0.7
4,763,249 + +0.7
4,763,250 - +1.1
4,763,250 - +1.7
4,763,250 - +0.1
4,763,288 + +0.7
4,763,288 + +1.7
4,763,289 - +0.1
4,763,289 - +1.7
4,763,544 - ABID97_RS23015 0.29 -2.7
4,763,673 - ABID97_RS23015 0.41 +0.7
4,763,673 - ABID97_RS23015 0.41 +2.7
4,763,673 - ABID97_RS23015 0.41 -0.7
4,763,915 + ABID97_RS23015 0.64 +0.3
4,763,972 + ABID97_RS23015 0.69 +0.7
4,763,972 + ABID97_RS23015 0.69 +1.7
4,763,972 + ABID97_RS23015 0.69 +0.7
4,763,972 + ABID97_RS23015 0.69 -0.7
4,763,972 + ABID97_RS23015 0.69 +1.7
4,763,973 - ABID97_RS23015 0.70 +0.7
4,764,092 - ABID97_RS23015 0.81 -0.9
4,764,092 - ABID97_RS23015 0.81 -0.3
4,764,248 + +1.7
4,764,249 - +1.7
4,764,249 - -0.9
4,764,249 - +1.7
4,764,289 + +2.7
4,764,290 - -0.7
4,764,290 - -0.2

Or see this region's nucleotide sequence