Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20650 and ABID97_RS20655 are separated by 110 nucleotides ABID97_RS20655 and ABID97_RS20660 are separated by 123 nucleotides ABID97_RS20660 and ABID97_RS20665 overlap by 1 nucleotides ABID97_RS20665 and ABID97_RS20670 are separated by 21 nucleotides ABID97_RS20670 and ABID97_RS20675 are separated by 102 nucleotides
ABID97_RS20650: ABID97_RS20650 - NAD(P)/FAD-dependent oxidoreductase, at 4,266,405 to 4,267,637
_RS20650
ABID97_RS20655: ABID97_RS20655 - 30S ribosomal protein S21, at 4,267,748 to 4,267,960
_RS20655
ABID97_RS20660: ABID97_RS20660 - GatB/YqeY domain-containing protein, at 4,268,084 to 4,268,533
_RS20660
ABID97_RS20665: ABID97_RS20665 - NUDIX domain-containing protein, at 4,268,533 to 4,269,003
_RS20665
ABID97_RS20670: ABID97_RS20670 - sulfite exporter TauE/SafE family protein, at 4,269,025 to 4,269,783
_RS20670
ABID97_RS20675: ABID97_RS20675 - LysR family transcriptional regulator, at 4,269,886 to 4,270,791
_RS20675
Position (kb)
4268
4269
4270 Strain fitness (log2 ratio)
-1
0
1 at 4267.540 kb on - strand at 4267.540 kb on - strand at 4267.584 kb on + strand at 4267.584 kb on + strand at 4267.955 kb on + strand at 4267.955 kb on + strand at 4268.956 kb on + strand, within ABID97_RS20665 at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.050 kb on + strand at 4269.051 kb on - strand at 4269.302 kb on + strand, within ABID97_RS20670 at 4269.437 kb on + strand, within ABID97_RS20670 at 4269.869 kb on + strand at 4269.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 4,267,540 - +0.3 4,267,540 - +1.5 4,267,584 + +0.5 4,267,584 + +0.7 4,267,955 + +0.3 4,267,955 + +0.4 4,268,956 + ABID97_RS20665 0.90 -0.7 4,269,050 + -0.2 4,269,050 + -0.3 4,269,050 + -0.4 4,269,050 + -0.2 4,269,050 + -0.1 4,269,050 + +0.3 4,269,051 - +0.5 4,269,302 + ABID97_RS20670 0.36 -1.1 4,269,437 + ABID97_RS20670 0.54 -0.3 4,269,869 + +1.2 4,269,869 + +1.0
Or see this region's nucleotide sequence