Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20665

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20650 and ABID97_RS20655 are separated by 110 nucleotidesABID97_RS20655 and ABID97_RS20660 are separated by 123 nucleotidesABID97_RS20660 and ABID97_RS20665 overlap by 1 nucleotidesABID97_RS20665 and ABID97_RS20670 are separated by 21 nucleotidesABID97_RS20670 and ABID97_RS20675 are separated by 102 nucleotides ABID97_RS20650: ABID97_RS20650 - NAD(P)/FAD-dependent oxidoreductase, at 4,266,405 to 4,267,637 _RS20650 ABID97_RS20655: ABID97_RS20655 - 30S ribosomal protein S21, at 4,267,748 to 4,267,960 _RS20655 ABID97_RS20660: ABID97_RS20660 - GatB/YqeY domain-containing protein, at 4,268,084 to 4,268,533 _RS20660 ABID97_RS20665: ABID97_RS20665 - NUDIX domain-containing protein, at 4,268,533 to 4,269,003 _RS20665 ABID97_RS20670: ABID97_RS20670 - sulfite exporter TauE/SafE family protein, at 4,269,025 to 4,269,783 _RS20670 ABID97_RS20675: ABID97_RS20675 - LysR family transcriptional regulator, at 4,269,886 to 4,270,791 _RS20675 Position (kb) 4268 4269 4270Strain fitness (log2 ratio) -1 0 1at 4267.540 kb on - strandat 4267.540 kb on - strandat 4267.584 kb on + strandat 4267.584 kb on + strandat 4267.955 kb on + strandat 4267.955 kb on + strandat 4268.956 kb on + strand, within ABID97_RS20665at 4269.050 kb on + strandat 4269.050 kb on + strandat 4269.050 kb on + strandat 4269.050 kb on + strandat 4269.050 kb on + strandat 4269.050 kb on + strandat 4269.051 kb on - strandat 4269.302 kb on + strand, within ABID97_RS20670at 4269.437 kb on + strand, within ABID97_RS20670at 4269.869 kb on + strandat 4269.869 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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4,267,540 - +0.3
4,267,540 - +1.5
4,267,584 + +0.5
4,267,584 + +0.7
4,267,955 + +0.3
4,267,955 + +0.4
4,268,956 + ABID97_RS20665 0.90 -0.7
4,269,050 + -0.2
4,269,050 + -0.3
4,269,050 + -0.4
4,269,050 + -0.2
4,269,050 + -0.1
4,269,050 + +0.3
4,269,051 - +0.5
4,269,302 + ABID97_RS20670 0.36 -1.1
4,269,437 + ABID97_RS20670 0.54 -0.3
4,269,869 + +1.2
4,269,869 + +1.0

Or see this region's nucleotide sequence