Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07545

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07535 and ABID97_RS07540 are separated by 65 nucleotidesABID97_RS07540 and ABID97_RS07545 overlap by 8 nucleotidesABID97_RS07545 and ABID97_RS07550 overlap by 77 nucleotides ABID97_RS07535: ABID97_RS07535 - ATP-binding cassette domain-containing protein, at 1,592,168 to 1,592,959 _RS07535 ABID97_RS07540: ABID97_RS07540 - DUF3305 domain-containing protein, at 1,593,025 to 1,593,570 _RS07540 ABID97_RS07545: ABID97_RS07545 - DUF3306 domain-containing protein, at 1,593,563 to 1,594,216 _RS07545 ABID97_RS07550: ABID97_RS07550 - 4Fe-4S dicluster domain-containing protein, at 1,594,140 to 1,596,278 _RS07550 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -1 0 1 2at 1593.346 kb on + strand, within ABID97_RS07540at 1593.346 kb on + strand, within ABID97_RS07540at 1593.346 kb on + strand, within ABID97_RS07540at 1593.347 kb on - strand, within ABID97_RS07540at 1593.449 kb on - strand, within ABID97_RS07540at 1593.903 kb on - strand, within ABID97_RS07545at 1593.903 kb on - strand, within ABID97_RS07545at 1593.903 kb on - strand, within ABID97_RS07545at 1593.903 kb on - strand, within ABID97_RS07545at 1593.903 kb on - strand, within ABID97_RS07545at 1593.914 kb on + strand, within ABID97_RS07545at 1594.495 kb on - strand, within ABID97_RS07550at 1594.713 kb on - strand, within ABID97_RS07550at 1594.786 kb on - strand, within ABID97_RS07550at 1594.957 kb on - strand, within ABID97_RS07550at 1594.957 kb on - strand, within ABID97_RS07550at 1595.058 kb on + strand, within ABID97_RS07550at 1595.058 kb on + strand, within ABID97_RS07550

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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1,593,346 + ABID97_RS07540 0.59 +2.2
1,593,346 + ABID97_RS07540 0.59 +1.3
1,593,346 + ABID97_RS07540 0.59 +1.4
1,593,347 - ABID97_RS07540 0.59 +0.4
1,593,449 - ABID97_RS07540 0.78 +0.3
1,593,903 - ABID97_RS07545 0.52 -0.6
1,593,903 - ABID97_RS07545 0.52 -1.2
1,593,903 - ABID97_RS07545 0.52 -0.5
1,593,903 - ABID97_RS07545 0.52 -1.3
1,593,903 - ABID97_RS07545 0.52 -0.1
1,593,914 + ABID97_RS07545 0.54 +0.8
1,594,495 - ABID97_RS07550 0.17 +0.4
1,594,713 - ABID97_RS07550 0.27 -0.0
1,594,786 - ABID97_RS07550 0.30 +0.9
1,594,957 - ABID97_RS07550 0.38 -0.2
1,594,957 - ABID97_RS07550 0.38 +0.5
1,595,058 + ABID97_RS07550 0.43 -0.1
1,595,058 + ABID97_RS07550 0.43 +1.9

Or see this region's nucleotide sequence