Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07535 and ABID97_RS07540 are separated by 65 nucleotides ABID97_RS07540 and ABID97_RS07545 overlap by 8 nucleotides ABID97_RS07545 and ABID97_RS07550 overlap by 77 nucleotides
ABID97_RS07535: ABID97_RS07535 - ATP-binding cassette domain-containing protein, at 1,592,168 to 1,592,959
_RS07535
ABID97_RS07540: ABID97_RS07540 - DUF3305 domain-containing protein, at 1,593,025 to 1,593,570
_RS07540
ABID97_RS07545: ABID97_RS07545 - DUF3306 domain-containing protein, at 1,593,563 to 1,594,216
_RS07545
ABID97_RS07550: ABID97_RS07550 - 4Fe-4S dicluster domain-containing protein, at 1,594,140 to 1,596,278
_RS07550
Position (kb)
1593
1594
1595 Strain fitness (log2 ratio)
-1
0
1
2 at 1593.346 kb on + strand, within ABID97_RS07540 at 1593.346 kb on + strand, within ABID97_RS07540 at 1593.346 kb on + strand, within ABID97_RS07540 at 1593.347 kb on - strand, within ABID97_RS07540 at 1593.449 kb on - strand, within ABID97_RS07540 at 1593.903 kb on - strand, within ABID97_RS07545 at 1593.903 kb on - strand, within ABID97_RS07545 at 1593.903 kb on - strand, within ABID97_RS07545 at 1593.903 kb on - strand, within ABID97_RS07545 at 1593.903 kb on - strand, within ABID97_RS07545 at 1593.914 kb on + strand, within ABID97_RS07545 at 1594.495 kb on - strand, within ABID97_RS07550 at 1594.713 kb on - strand, within ABID97_RS07550 at 1594.786 kb on - strand, within ABID97_RS07550 at 1594.957 kb on - strand, within ABID97_RS07550 at 1594.957 kb on - strand, within ABID97_RS07550 at 1595.058 kb on + strand, within ABID97_RS07550 at 1595.058 kb on + strand, within ABID97_RS07550
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 1,593,346 + ABID97_RS07540 0.59 +2.2 1,593,346 + ABID97_RS07540 0.59 +1.3 1,593,346 + ABID97_RS07540 0.59 +1.4 1,593,347 - ABID97_RS07540 0.59 +0.4 1,593,449 - ABID97_RS07540 0.78 +0.3 1,593,903 - ABID97_RS07545 0.52 -0.6 1,593,903 - ABID97_RS07545 0.52 -1.2 1,593,903 - ABID97_RS07545 0.52 -0.5 1,593,903 - ABID97_RS07545 0.52 -1.3 1,593,903 - ABID97_RS07545 0.52 -0.1 1,593,914 + ABID97_RS07545 0.54 +0.8 1,594,495 - ABID97_RS07550 0.17 +0.4 1,594,713 - ABID97_RS07550 0.27 -0.0 1,594,786 - ABID97_RS07550 0.30 +0.9 1,594,957 - ABID97_RS07550 0.38 -0.2 1,594,957 - ABID97_RS07550 0.38 +0.5 1,595,058 + ABID97_RS07550 0.43 -0.1 1,595,058 + ABID97_RS07550 0.43 +1.9
Or see this region's nucleotide sequence