Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01310 and ABID97_RS01315 overlap by 4 nucleotides ABID97_RS01315 and ABID97_RS01320 overlap by 8 nucleotides ABID97_RS01320 and ABID97_RS01325 overlap by 4 nucleotides ABID97_RS01325 and ABID97_RS01330 overlap by 28 nucleotides
ABID97_RS01310: ABID97_RS01310 - VOC family protein, at 266,942 to 267,877
_RS01310
ABID97_RS01315: ABID97_RS01315 - ABC transporter ATP-binding protein, at 267,874 to 268,614
_RS01315
ABID97_RS01320: ABID97_RS01320 - ABC transporter ATP-binding protein, at 268,607 to 269,368
_RS01320
ABID97_RS01325: ABID97_RS01325 - branched-chain amino acid ABC transporter permease, at 269,365 to 270,219
_RS01325
ABID97_RS01330: ABID97_RS01330 - branched-chain amino acid ABC transporter permease, at 270,192 to 271,130
_RS01330
Position (kb) 268
269
270 Strain fitness (log2 ratio) -1
0
1 at 267.856 kb on - strand at 268.004 kb on + strand, within ABID97_RS01315 at 268.004 kb on + strand, within ABID97_RS01315 at 268.729 kb on + strand, within ABID97_RS01320 at 268.729 kb on + strand, within ABID97_RS01320 at 268.730 kb on - strand, within ABID97_RS01320 at 268.730 kb on - strand, within ABID97_RS01320 at 269.481 kb on - strand, within ABID97_RS01325 at 269.645 kb on + strand, within ABID97_RS01325 at 269.702 kb on + strand, within ABID97_RS01325 at 269.703 kb on - strand, within ABID97_RS01325 at 269.768 kb on + strand, within ABID97_RS01325 at 269.768 kb on + strand, within ABID97_RS01325 at 269.769 kb on - strand, within ABID97_RS01325 at 269.870 kb on - strand, within ABID97_RS01325 at 270.087 kb on - strand, within ABID97_RS01325 at 270.361 kb on + strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 267,856 - -0.0 268,004 + ABID97_RS01315 0.18 +1.7 268,004 + ABID97_RS01315 0.18 +1.6 268,729 + ABID97_RS01320 0.16 +1.0 268,729 + ABID97_RS01320 0.16 +0.4 268,730 - ABID97_RS01320 0.16 -0.0 268,730 - ABID97_RS01320 0.16 +0.4 269,481 - ABID97_RS01325 0.14 -0.5 269,645 + ABID97_RS01325 0.33 -0.9 269,702 + ABID97_RS01325 0.39 +0.8 269,703 - ABID97_RS01325 0.40 +1.3 269,768 + ABID97_RS01325 0.47 +0.2 269,768 + ABID97_RS01325 0.47 -0.3 269,769 - ABID97_RS01325 0.47 -0.4 269,870 - ABID97_RS01325 0.59 -0.0 270,087 - ABID97_RS01325 0.84 +0.2 270,361 + ABID97_RS01330 0.18 -0.2 270,362 - ABID97_RS01330 0.18 -0.2 270,362 - ABID97_RS01330 0.18 -0.5
Or see this region's nucleotide sequence