Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00840

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00830 and ABID97_RS00835 are separated by 63 nucleotidesABID97_RS00835 and ABID97_RS00840 are separated by 220 nucleotidesABID97_RS00840 and ABID97_RS00845 are separated by 91 nucleotidesABID97_RS00845 and ABID97_RS00850 overlap by 4 nucleotides ABID97_RS00830: ABID97_RS00830 - peptidoglycan-binding protein LysM, at 164,764 to 165,225 _RS00830 ABID97_RS00835: ABID97_RS00835 - rhodanese-like domain-containing protein, at 165,289 to 165,702 _RS00835 ABID97_RS00840: ABID97_RS00840 - TRAP transporter substrate-binding protein, at 165,923 to 167,038 _RS00840 ABID97_RS00845: ABID97_RS00845 - TRAP transporter small permease subunit, at 167,130 to 167,750 _RS00845 ABID97_RS00850: ABID97_RS00850 - TRAP transporter large permease subunit, at 167,747 to 169,714 _RS00850 Position (kb) 165 166 167 168Strain fitness (log2 ratio) -1 0 1 2at 165.067 kb on + strand, within ABID97_RS00830at 165.068 kb on - strand, within ABID97_RS00830at 165.068 kb on - strand, within ABID97_RS00830at 165.116 kb on - strand, within ABID97_RS00830at 165.116 kb on - strand, within ABID97_RS00830at 165.136 kb on + strand, within ABID97_RS00830at 165.137 kb on - strand, within ABID97_RS00830at 165.191 kb on - strandat 165.389 kb on + strand, within ABID97_RS00835at 165.389 kb on + strand, within ABID97_RS00835at 165.390 kb on - strand, within ABID97_RS00835at 165.675 kb on - strandat 165.703 kb on - strandat 165.866 kb on - strandat 165.907 kb on + strandat 165.908 kb on - strandat 166.224 kb on - strand, within ABID97_RS00840at 166.313 kb on + strand, within ABID97_RS00840at 166.314 kb on - strand, within ABID97_RS00840at 166.346 kb on + strand, within ABID97_RS00840at 166.346 kb on + strand, within ABID97_RS00840at 166.346 kb on + strand, within ABID97_RS00840at 166.347 kb on - strand, within ABID97_RS00840at 166.376 kb on + strand, within ABID97_RS00840at 166.377 kb on - strand, within ABID97_RS00840at 166.383 kb on - strand, within ABID97_RS00840at 166.796 kb on + strand, within ABID97_RS00840at 166.797 kb on - strand, within ABID97_RS00840at 166.977 kb on - strandat 166.977 kb on - strandat 167.000 kb on + strandat 167.000 kb on + strandat 167.000 kb on + strandat 167.010 kb on - strandat 167.241 kb on + strand, within ABID97_RS00845at 167.242 kb on - strand, within ABID97_RS00845at 167.293 kb on - strand, within ABID97_RS00845at 167.365 kb on - strand, within ABID97_RS00845at 167.365 kb on - strand, within ABID97_RS00845at 167.412 kb on + strand, within ABID97_RS00845at 167.412 kb on + strand, within ABID97_RS00845at 167.412 kb on + strand, within ABID97_RS00845at 167.466 kb on + strand, within ABID97_RS00845at 167.466 kb on + strand, within ABID97_RS00845at 167.466 kb on + strand, within ABID97_RS00845at 167.467 kb on - strand, within ABID97_RS00845at 167.467 kb on - strand, within ABID97_RS00845at 167.952 kb on - strand, within ABID97_RS00850at 168.000 kb on - strand, within ABID97_RS00850

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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165,067 + ABID97_RS00830 0.66 +0.0
165,068 - ABID97_RS00830 0.66 +0.9
165,068 - ABID97_RS00830 0.66 +0.7
165,116 - ABID97_RS00830 0.76 +0.4
165,116 - ABID97_RS00830 0.76 +0.7
165,136 + ABID97_RS00830 0.81 +0.5
165,137 - ABID97_RS00830 0.81 -0.5
165,191 - -0.7
165,389 + ABID97_RS00835 0.24 +1.3
165,389 + ABID97_RS00835 0.24 +0.3
165,390 - ABID97_RS00835 0.24 -0.5
165,675 - +1.2
165,703 - +1.0
165,866 - +1.0
165,907 + -0.2
165,908 - +0.0
166,224 - ABID97_RS00840 0.27 +1.0
166,313 + ABID97_RS00840 0.35 -0.6
166,314 - ABID97_RS00840 0.35 +0.1
166,346 + ABID97_RS00840 0.38 -0.3
166,346 + ABID97_RS00840 0.38 -0.5
166,346 + ABID97_RS00840 0.38 +2.7
166,347 - ABID97_RS00840 0.38 -1.2
166,376 + ABID97_RS00840 0.41 +0.3
166,377 - ABID97_RS00840 0.41 -0.0
166,383 - ABID97_RS00840 0.41 +0.3
166,796 + ABID97_RS00840 0.78 -1.0
166,797 - ABID97_RS00840 0.78 -0.2
166,977 - +0.6
166,977 - +0.3
167,000 + -0.3
167,000 + -1.1
167,000 + +1.9
167,010 - -0.1
167,241 + ABID97_RS00845 0.18 -0.3
167,242 - ABID97_RS00845 0.18 +0.3
167,293 - ABID97_RS00845 0.26 -1.4
167,365 - ABID97_RS00845 0.38 +1.1
167,365 - ABID97_RS00845 0.38 +1.1
167,412 + ABID97_RS00845 0.45 +0.1
167,412 + ABID97_RS00845 0.45 -0.2
167,412 + ABID97_RS00845 0.45 +0.2
167,466 + ABID97_RS00845 0.54 +0.4
167,466 + ABID97_RS00845 0.54 -0.2
167,466 + ABID97_RS00845 0.54 -0.3
167,467 - ABID97_RS00845 0.54 -1.1
167,467 - ABID97_RS00845 0.54 -0.7
167,952 - ABID97_RS00850 0.10 +0.9
168,000 - ABID97_RS00850 0.13 +0.1

Or see this region's nucleotide sequence