Experiment: phage_S63 51MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21785 and ABID97_RS21790 are separated by 1 nucleotides ABID97_RS21790 and ABID97_RS21795 overlap by 8 nucleotides ABID97_RS21795 and ABID97_RS21800 overlap by 4 nucleotides ABID97_RS21800 and ABID97_RS21805 are separated by 22 nucleotides
ABID97_RS21785: ABID97_RS21785 - ATP-binding protein, at 4,504,089 to 4,505,714
_RS21785
ABID97_RS21790: ABID97_RS21790 - hypothetical protein, at 4,505,716 to 4,506,540
_RS21790
ABID97_RS21795: ABID97_RS21795 - DEAD/DEAH box helicase, at 4,506,533 to 4,508,356
_RS21795
ABID97_RS21800: ABID97_RS21800 - EcoRII N-terminal effector-binding domain-containing protein, at 4,508,353 to 4,508,793
_RS21800
ABID97_RS21805: ABID97_RS21805 - AIPR family protein, at 4,508,816 to 4,510,930
_RS21805
Position (kb) 4506
4507
4508
4509 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4505.551 kb on + strand, within ABID97_RS21785 at 4505.588 kb on + strand at 4505.666 kb on + strand at 4506.081 kb on + strand, within ABID97_RS21790 at 4506.119 kb on + strand, within ABID97_RS21790 at 4506.119 kb on + strand, within ABID97_RS21790 at 4506.191 kb on + strand, within ABID97_RS21790 at 4506.191 kb on + strand, within ABID97_RS21790 at 4506.191 kb on + strand, within ABID97_RS21790 at 4506.192 kb on - strand, within ABID97_RS21790 at 4506.192 kb on - strand, within ABID97_RS21790 at 4506.192 kb on - strand, within ABID97_RS21790 at 4506.192 kb on - strand, within ABID97_RS21790 at 4506.252 kb on - strand, within ABID97_RS21790 at 4506.284 kb on + strand, within ABID97_RS21790 at 4506.285 kb on - strand, within ABID97_RS21790 at 4506.285 kb on - strand, within ABID97_RS21790 at 4506.285 kb on - strand, within ABID97_RS21790 at 4506.346 kb on + strand, within ABID97_RS21790 at 4506.419 kb on - strand, within ABID97_RS21790 at 4506.510 kb on - strand at 4506.510 kb on - strand at 4506.730 kb on + strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.731 kb on - strand, within ABID97_RS21795 at 4506.754 kb on + strand, within ABID97_RS21795 at 4506.831 kb on - strand, within ABID97_RS21795 at 4506.831 kb on - strand, within ABID97_RS21795 at 4506.861 kb on + strand, within ABID97_RS21795 at 4506.862 kb on - strand, within ABID97_RS21795 at 4506.862 kb on - strand, within ABID97_RS21795 at 4506.872 kb on - strand, within ABID97_RS21795 at 4506.872 kb on - strand, within ABID97_RS21795 at 4506.978 kb on - strand, within ABID97_RS21795 at 4506.978 kb on - strand, within ABID97_RS21795 at 4507.035 kb on + strand, within ABID97_RS21795 at 4507.035 kb on + strand, within ABID97_RS21795 at 4507.036 kb on - strand, within ABID97_RS21795 at 4507.036 kb on - strand, within ABID97_RS21795 at 4507.195 kb on - strand, within ABID97_RS21795 at 4507.268 kb on + strand, within ABID97_RS21795 at 4507.269 kb on - strand, within ABID97_RS21795 at 4507.510 kb on + strand, within ABID97_RS21795 at 4507.510 kb on + strand, within ABID97_RS21795 at 4507.510 kb on + strand, within ABID97_RS21795 at 4507.511 kb on - strand, within ABID97_RS21795 at 4507.635 kb on + strand, within ABID97_RS21795 at 4507.635 kb on + strand, within ABID97_RS21795 at 4507.697 kb on + strand, within ABID97_RS21795 at 4507.697 kb on + strand, within ABID97_RS21795 at 4507.698 kb on - strand, within ABID97_RS21795 at 4507.702 kb on + strand, within ABID97_RS21795 at 4507.724 kb on - strand, within ABID97_RS21795 at 4507.765 kb on + strand, within ABID97_RS21795 at 4507.766 kb on - strand, within ABID97_RS21795 at 4507.766 kb on - strand, within ABID97_RS21795 at 4507.766 kb on - strand, within ABID97_RS21795 at 4507.766 kb on - strand, within ABID97_RS21795 at 4507.812 kb on + strand, within ABID97_RS21795 at 4507.813 kb on - strand, within ABID97_RS21795 at 4507.827 kb on - strand, within ABID97_RS21795 at 4508.017 kb on + strand, within ABID97_RS21795 at 4508.017 kb on + strand, within ABID97_RS21795 at 4508.018 kb on - strand, within ABID97_RS21795 at 4508.018 kb on - strand, within ABID97_RS21795 at 4508.065 kb on - strand, within ABID97_RS21795 at 4508.095 kb on + strand, within ABID97_RS21795 at 4508.095 kb on + strand, within ABID97_RS21795 at 4508.221 kb on + strand at 4508.290 kb on - strand at 4508.300 kb on - strand at 4508.373 kb on + strand at 4508.374 kb on - strand at 4508.382 kb on - strand at 4508.382 kb on - strand at 4508.396 kb on + strand at 4508.526 kb on + strand, within ABID97_RS21800 at 4508.526 kb on + strand, within ABID97_RS21800 at 4508.554 kb on + strand, within ABID97_RS21800 at 4508.555 kb on - strand, within ABID97_RS21800 at 4508.607 kb on + strand, within ABID97_RS21800 at 4508.608 kb on - strand, within ABID97_RS21800 at 4508.608 kb on - strand, within ABID97_RS21800 at 4508.611 kb on + strand, within ABID97_RS21800 at 4508.612 kb on - strand, within ABID97_RS21800 at 4508.612 kb on - strand, within ABID97_RS21800 at 4508.612 kb on - strand, within ABID97_RS21800 at 4508.699 kb on + strand, within ABID97_RS21800 at 4508.706 kb on - strand, within ABID97_RS21800 at 4508.772 kb on + strand at 4508.773 kb on - strand at 4509.050 kb on + strand, within ABID97_RS21805 at 4509.155 kb on + strand, within ABID97_RS21805 at 4509.244 kb on + strand, within ABID97_RS21805 at 4509.244 kb on + strand, within ABID97_RS21805 at 4509.245 kb on - strand, within ABID97_RS21805 at 4509.245 kb on - strand, within ABID97_RS21805 at 4509.262 kb on + strand, within ABID97_RS21805 at 4509.262 kb on + strand, within ABID97_RS21805 at 4509.263 kb on - strand, within ABID97_RS21805 at 4509.263 kb on - strand, within ABID97_RS21805 at 4509.263 kb on - strand, within ABID97_RS21805 at 4509.263 kb on - strand, within ABID97_RS21805 at 4509.263 kb on - strand, within ABID97_RS21805 at 4509.263 kb on - strand, within ABID97_RS21805
Per-strain Table
Position Strand Gene LocusTag Fraction phage_S63 51MOI remove 4,505,551 + ABID97_RS21785 0.90 +0.6 4,505,588 + -0.5 4,505,666 + -0.8 4,506,081 + ABID97_RS21790 0.44 +0.0 4,506,119 + ABID97_RS21790 0.49 -0.7 4,506,119 + ABID97_RS21790 0.49 +0.2 4,506,191 + ABID97_RS21790 0.58 -0.2 4,506,191 + ABID97_RS21790 0.58 -1.0 4,506,191 + ABID97_RS21790 0.58 +0.1 4,506,192 - ABID97_RS21790 0.58 -0.2 4,506,192 - ABID97_RS21790 0.58 -1.4 4,506,192 - ABID97_RS21790 0.58 -0.9 4,506,192 - ABID97_RS21790 0.58 -0.0 4,506,252 - ABID97_RS21790 0.65 -0.4 4,506,284 + ABID97_RS21790 0.69 +0.1 4,506,285 - ABID97_RS21790 0.69 -1.4 4,506,285 - ABID97_RS21790 0.69 -0.6 4,506,285 - ABID97_RS21790 0.69 -0.1 4,506,346 + ABID97_RS21790 0.76 -0.3 4,506,419 - ABID97_RS21790 0.85 -0.4 4,506,510 - -0.3 4,506,510 - -0.0 4,506,730 + ABID97_RS21795 0.11 +0.6 4,506,731 - ABID97_RS21795 0.11 -0.6 4,506,731 - ABID97_RS21795 0.11 -1.2 4,506,731 - ABID97_RS21795 0.11 +0.3 4,506,731 - ABID97_RS21795 0.11 +0.1 4,506,731 - ABID97_RS21795 0.11 -0.4 4,506,731 - ABID97_RS21795 0.11 -1.0 4,506,731 - ABID97_RS21795 0.11 -0.0 4,506,754 + ABID97_RS21795 0.12 -0.1 4,506,831 - ABID97_RS21795 0.16 -0.4 4,506,831 - ABID97_RS21795 0.16 -1.5 4,506,861 + ABID97_RS21795 0.18 +0.2 4,506,862 - ABID97_RS21795 0.18 +0.6 4,506,862 - ABID97_RS21795 0.18 -0.5 4,506,872 - ABID97_RS21795 0.19 +0.2 4,506,872 - ABID97_RS21795 0.19 +0.5 4,506,978 - ABID97_RS21795 0.24 -0.2 4,506,978 - ABID97_RS21795 0.24 -0.7 4,507,035 + ABID97_RS21795 0.28 +0.4 4,507,035 + ABID97_RS21795 0.28 -0.3 4,507,036 - ABID97_RS21795 0.28 +0.4 4,507,036 - ABID97_RS21795 0.28 -0.2 4,507,195 - ABID97_RS21795 0.36 -0.0 4,507,268 + ABID97_RS21795 0.40 +0.6 4,507,269 - ABID97_RS21795 0.40 +0.1 4,507,510 + ABID97_RS21795 0.54 +0.6 4,507,510 + ABID97_RS21795 0.54 -0.1 4,507,510 + ABID97_RS21795 0.54 -0.8 4,507,511 - ABID97_RS21795 0.54 +1.0 4,507,635 + ABID97_RS21795 0.60 -0.7 4,507,635 + ABID97_RS21795 0.60 -0.3 4,507,697 + ABID97_RS21795 0.64 +0.0 4,507,697 + ABID97_RS21795 0.64 +0.4 4,507,698 - ABID97_RS21795 0.64 +0.1 4,507,702 + ABID97_RS21795 0.64 +0.4 4,507,724 - ABID97_RS21795 0.65 -0.9 4,507,765 + ABID97_RS21795 0.68 -0.1 4,507,766 - ABID97_RS21795 0.68 -0.7 4,507,766 - ABID97_RS21795 0.68 -1.4 4,507,766 - ABID97_RS21795 0.68 -0.3 4,507,766 - ABID97_RS21795 0.68 -0.5 4,507,812 + ABID97_RS21795 0.70 -0.2 4,507,813 - ABID97_RS21795 0.70 -2.8 4,507,827 - ABID97_RS21795 0.71 -0.6 4,508,017 + ABID97_RS21795 0.81 -0.8 4,508,017 + ABID97_RS21795 0.81 -0.2 4,508,018 - ABID97_RS21795 0.81 -2.1 4,508,018 - ABID97_RS21795 0.81 -1.2 4,508,065 - ABID97_RS21795 0.84 +0.5 4,508,095 + ABID97_RS21795 0.86 +1.6 4,508,095 + ABID97_RS21795 0.86 -0.3 4,508,221 + -0.1 4,508,290 - +0.3 4,508,300 - -0.4 4,508,373 + +0.3 4,508,374 - -0.6 4,508,382 - -0.0 4,508,382 - -0.0 4,508,396 + -1.0 4,508,526 + ABID97_RS21800 0.39 +0.1 4,508,526 + ABID97_RS21800 0.39 -1.0 4,508,554 + ABID97_RS21800 0.46 -0.4 4,508,555 - ABID97_RS21800 0.46 -0.3 4,508,607 + ABID97_RS21800 0.58 +0.4 4,508,608 - ABID97_RS21800 0.58 -1.0 4,508,608 - ABID97_RS21800 0.58 +0.1 4,508,611 + ABID97_RS21800 0.59 +0.6 4,508,612 - ABID97_RS21800 0.59 -0.6 4,508,612 - ABID97_RS21800 0.59 -0.7 4,508,612 - ABID97_RS21800 0.59 +0.2 4,508,699 + ABID97_RS21800 0.78 -0.3 4,508,706 - ABID97_RS21800 0.80 +0.4 4,508,772 + -0.6 4,508,773 - -0.2 4,509,050 + ABID97_RS21805 0.11 -0.2 4,509,155 + ABID97_RS21805 0.16 -0.6 4,509,244 + ABID97_RS21805 0.20 +0.2 4,509,244 + ABID97_RS21805 0.20 +0.8 4,509,245 - ABID97_RS21805 0.20 -0.1 4,509,245 - ABID97_RS21805 0.20 -0.0 4,509,262 + ABID97_RS21805 0.21 -0.6 4,509,262 + ABID97_RS21805 0.21 -0.4 4,509,263 - ABID97_RS21805 0.21 +0.3 4,509,263 - ABID97_RS21805 0.21 +0.2 4,509,263 - ABID97_RS21805 0.21 -0.1 4,509,263 - ABID97_RS21805 0.21 +0.2 4,509,263 - ABID97_RS21805 0.21 -0.4 4,509,263 - ABID97_RS21805 0.21 -0.3
Or see this region's nucleotide sequence